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Publications

Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret J-P, Chiovitti A, Choi CJae, Coesel S, De Martino A, J Detter C, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Le Secq M-POudot-, Napoli C, Obornik M, Parker MSchnitzler, Petit J-L, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, E Armbrust V, Green BR, Van de Peer Y, Grigoriev IV. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456(7219), pp.239-44 (2008).
Bernardes JS, Dávila AMR, Costa VS, Zaverucha G. Improving model construction of profile HMMs for remote homology detection through structural alignment. BMC Bioinformatics. 8, pp.435 (2007).
Gheorghiu-Svirschevski S, IM Rouzine, Coffin JM. Increasing sequence correlation limits the efficiency of recombination in a multisite evolution model. Mol Biol Evol. 24(2), pp.574-86 (2007).
IM Rouzine, Coffin JM. Highly fit ancestors of a partly sexual haploid population. Theor Popul Biol. 71(2), pp.239-50 (2007).
Baussand J, Carbone A. Metagénomique bactérienne et virale - nouvelles définitions d'espace microbien et nouveaux défis algorithmiques. Technique et Sciences Informatiques, special issue on "Modeling, simulations in postgenomics", Hérmes. (2007).
Montsant A, Allen AE, Coesel S, De Martino A, Falciatore A, Mangogna M, Siaut M, Heijde M, Jabbari K, Maheswari U, Rayko E, Vardi A, Apt KE, Berges JA, Chiovitti A, Davis AK, Thamatrakoln K, Hadi MZ, Lane TW, J. Lippmeier C, Martinez D, Parker MS, Pazour GJ, Saito MA, Rokhsar DS, E. Armbrust V, Bowler C. Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana. Journal of Phycology. 43, pp.585–604 (2007).
Breton J, Bart-Delabesse E, Biligui S, Carbone A, Seiller X, Okome-Nkoumou M, Nzamba C, Kombila M, Accoceberry I, Thellier M. New Highly Divergent rRNA Sequence among Biodiverse Genotypes of Enterocytozoon bieneusi Strains Isolated from Humans in Gabon and Cameroon. Journal of Clinical Microbiology. 45, pp.2580-2589 (2007).
Cosentino Lagomarsino M, Sellerio A, Isambert H, Bassetti B A large-scale evolutionary approach to the analysis of transcription networks. in SYSBIOHEALTH Symposium. Milano. Locomia Innovazione Publ. . (2007)
Baussand J, Deremble C, Carbone A. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins. Proteins. 67(3), pp.695-708 (2007).
Carbone A Adaptation studied with the self-consistent codon index: genomic spaces, metabolic network comparison, minimal gene sets and viral classification. in Proceedings of the Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics. Genopole, Evry. EDP Sciences. (2007)
Lacoste D, Cosentino Lagomarsino M, Joanny JF. Fluctuations of a driven membrane in an electrolyte. EPL (Europhysics Letters). 77, pp.18006 (2007).
Bassetti F, Cosentino Lagomarsino M, Mandrà S. Exchangeable random networks. Internet Mathematics. 4, pp.357–400 (2007).
Llopis I, Pagonabarraga I, Cosentino Lagomarsino M, Lowe CP. Sedimentation of pairs of hydrodynamically interacting semiflexible filaments. Phys Rev E Stat Nonlin Soft Matter Phys. 76(6 Pt 1), pp.061901 (2007).
Siaut M, Heijde M, Mangogna M, Montsant A, Coesel S, Allen A, Manfredonia A, Falciatore A, Bowler C. Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum. Gene. 406(1-2), pp.23-35 (2007).
Garcia M, Darzacq X, Delaveau T, Jourdren L, Singer RH, Jacq C. Mitochondria-associated yeast mRNAs and the biogenesis of molecular complexes. Mol Biol Cell. 18(2), pp.362-8 (2007).

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