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Publications

Carbone A, Gromov M.
Functional labels and syntactic entropy on DNA strings and proteins.
Theoretical computer science. 303, pp.35–51 (2003).
Carbone A, Seeman NC.
Coding and geometrical shapes in nanostructures: a fractal DNA-assembly.
Natural Computing. 2, pp.133–151 (2003).
Cosentino Lagomarsino M, Dogterom M, Dijkstra M.
Isotropic–nematic transition of long, thin, hard spherocylinders confined in a quasi-two-dimensional planar geometry.
The Journal of chemical physics. 119, pp.3535–3540 (2003).
Robelin D, Richard H, Prum B.
SIC: A tool to detect short inverted segments in a biological sequence.
Nucleic Acids Res. 31(13), pp.3669-71 (2003).
Lucau-Danila A, Delaveau T, Lelandais G, Devaux F, Jacq C.
Competitive promoter occupancy by two yeast paralogous transcription factors controlling the multidrug resistance phenomenon.
J Biol Chem. 278(52), pp.52641-50 (2003).
Richard H, Nuel G.
SPA: Simple web tool to assess statistical significance of DNA patterns.
Nucleic Acids Res. 31(13), pp.3679-81 (2003).
Wenner T, Roth V, Fischer G, Fourrier C, Aigle B, Decaris B, Leblond P.
End-to-end fusion of linear deleted chromosomes initiates a cycle of genome instability in Streptomyces ambofaciens.
Mol Microbiol. 50(2), pp.411-25 (2003).
Ganem C, Devaux F, Torchet C, Jacq C, Quevillon-Cheruel S, Labesse G, Facca C, Faye G.
Ssu72 is a phosphatase essential for transcription termination of snoRNAs and specific mRNAs in yeast.
EMBO J. 22(7), pp.1588-98 (2003).
Cosentino Lagomarsino M, Jona P, Bassetti B.
Metachronal waves for deterministic switching two-state oscillators with hydrodynamic interaction.
Phys Rev E Stat Nonlin Soft Matter Phys. 68(2 Pt 1), pp.021908 (2003).
Carbone A, Zinovyev A, Képès F.
Codon adaptation index as a measure of dominating codon bias.
Bioinformatics. 19(16), pp.2005-15 (2003).
Hikkel I, Lucau-Danila A, Delaveau T, Marc P, Devaux F, Jacq C.
A general strategy to uncover transcription factor properties identifies a new regulator of drug resistance in yeast.
J Biol Chem. 278(13), pp.11427-32 (2003).
Merendino L, Falciatore A, Rochaix J-D.
Expression and RNA binding properties of the chloroplast ribosomal protein S1 from Chlamydomonas reinhardtii.
Plant Mol Biol. 53(3), pp.371-82 (2003).
Mishra B, Daruwala R-S, Zhou Y, Ugel N, Policriti A, Antoniotti M, Paxia S, Rejali M, Rudra A, Cherepinsky V, Silver N, Casey W, Piazza C, Simeoni M, Barbano P, Spivak M, Feng J, Gill O, Venkatesh M, Cheng F, Sun B, Ioniata I, Anantharaman T, E Hubbard JAlbert, Pnueli A, Harel D, Chandru V, Hariharan R, Wigler M, Park F, Lin S-C, Lazebnik Y, Winkler F, Cantor CR, Carbone A, Gromov M.
A sense of life: computational and experimental investigations with models of biochemical and evolutionary processes.
OMICS. 7(3), pp.253-68 (2003).
Kuthan M, Devaux F, Janderová B, Slaninova I, Jacq C, Palková Z.
Domestication of wild Saccharomyces cerevisiae is accompanied by changes in gene expression and colony morphology.
Mol Microbiol. 47(3), pp.745-54 (2003).
Cosentino Lagomarsino M, Capuani F, Lowe C P.
A simulation study of the dynamics of a driven filament in an Aristotelian fluid.
ArXiv Physics e-prints. (2002).

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