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Publications

Kuthan M, Devaux F, Janderová B, Slaninova I, Jacq C, Palková Z. Domestication of wild Saccharomyces cerevisiae is accompanied by changes in gene expression and colony morphology. Mol Microbiol. 47(3), pp.745-54 (2003).
Mishra B, Daruwala R-S, Zhou Y, Ugel N, Policriti A, Antoniotti M, Paxia S, Rejali M, Rudra A, Cherepinsky V, Silver N, Casey W, Piazza C, Simeoni M, Barbano P, Spivak M, Feng J, Gill O, Venkatesh M, Cheng F, Sun B, Ioniata I, Anantharaman T, E Hubbard JAlbert, Pnueli A, Harel D, Chandru V, Hariharan R, Wigler M, Park F, Lin S-C, Lazebnik Y, Winkler F, Cantor CR, Carbone A, Gromov M. A sense of life: computational and experimental investigations with models of biochemical and evolutionary processes. OMICS. 7(3), pp.253-68 (2003).
Richard H, Nuel G. SPA: Simple web tool to assess statistical significance of DNA patterns. Nucleic Acids Res. 31(13), pp.3679-81 (2003).
Cosentino Lagomarsino M, Capuani F, Lowe C P. A simulation study of the dynamics of a driven filament in an Aristotelian fluid. ArXiv Physics e-prints. (2002).
Falciatore A, Formiggini F, Bowler C Reporter genes for plant cells. in Molecular Plant Biology: A Pratical Approach. 2, pp. 265 - 283 (2002)
Carbone A, Seeman NC. A route to fractal DNA-assembly. Natural Computing. 1, pp.469–480 (2002).
Cosentino Lagomarsino M, Bassetti B, Jona P. Rowers coupled hydrodynamically. Modeling possible mechanisms for the cooperation of cilia. The European Physical Journal B-Condensed Matter and Complex Systems. 26, pp.81–88 (2002).
Robin S, Daudin J-J, Richard H, Sagot M-F, Schbath S. Occurrence probability of structured motifs in random sequences. J Comput Biol. 9(6), pp.761-73 (2002).
Le Crom S, Devaux F, Jacq C, Marc P. yMGV: helping biologists with yeast microarray data mining. Nucleic Acids Res. 30(1), pp.76-9 (2002).
Le Crom S, Devaux F, Marc P, Zhang X, W Moye-Rowley S, Jacq C. New insights into the pleiotropic drug resistance network from genome-wide characterization of the YRR1 transcription factor regulation system. Mol Cell Biol. 22(8), pp.2642-9 (2002).
Palková Z, Devaux F, Icicová M, Mináriková L, Le Crom S, Jacq C. Ammonia pulses and metabolic oscillations guide yeast colony development. Mol Biol Cell. 13(11), pp.3901-14 (2002).
Marc P, Margeot A, Devaux F, Blugeon C, Corral-Debrinski M, Jacq C. Genome-wide analysis of mRNAs targeted to yeast mitochondria. EMBO Rep. 3(2), pp.159-64 (2002).
Scala S, Carels N, Falciatore A, Chiusano MLuisa, Bowler C. Genome properties of the diatom Phaeodactylum tricornutum. Plant Physiol. 129(3), pp.993-1002 (2002).
Devaux F, Carvajal E, Moye-Rowley S, Jacq C. Genome-wide studies on the nuclear PDR3-controlled response to mitochondrial dysfunction in yeast. FEBS Lett. 515(1-3), pp.25-8 (2002).
Falciatore A, Bowler C. Revealing the molecular secrets of marine diatoms. Annu Rev Plant Biol. 53, pp.109-30 (2002).

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