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Publications

Ye S, Berger AAnn, Petzold D, Reimann O, Matt B, Koksch B. Chemical aminoacylation of tRNAs with fluorinated amino acids for in vitro protein mutagenesis. O’Hagan D (Eds.). Beilstein Journal of Organic Chemistry. 6, pp.40 (2010).
IM Rouzine, Coffin JM. Multi-site adaptation in the presence of infrequent recombination. Theoretical population biology. 77, pp.189–204 (2010).
Sergeev RA, Batorsky RE, IM Rouzine. Model with two types of CTL regulation and experiments on CTL dynamics. J Theor Biol. 263(3), pp.369-84 (2010).
Ye S, Zaitseva E, Caltabiano G, Schertler GFX, Sakmar TP, Deupi X, Vogel R. Tracking G-protein-coupled receptor activation using genetically encoded infrared probes. Nature. 464(7293), pp.1386-9 (2010).
Pakdaman K, Perthame B, Salort D. Dynamics of a structured neuron population. Nonlinearity. 23, pp.55 (2010).
Bernicot F, Maury B, Salort D. A 2-adic approach of the human respiratory tree. ArXiv e-prints. (2010).
Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LDW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TAF, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Lin Y-C, George J, Sweedler J, Southey B, Gunaratne P, Watson M, Nam K, Backstrom N, Smeds L, Nabholz B, Itoh Y, Whitney O, Pfenning AR, Howard J, Volker M, Skinner BM, Griffin DK, Ye L, McLaren WM, Flicek P, Quesada V, Velasco G, Lopez-Otin C, Puente XS, Olender T, Lancet D, Smit AFA, Hubley R, Konkel MK, Walker JA, Batzer MA, Gu W, Pollock DD, Chen L, Cheng Z, Eichler EE, Stapley J, Slate J, Ekblom R, Birkhead T, Burke T, Burt D, Scharff C, Adam I, Richard H, Sultan M, Soldatov A, Lehrach H, Edwards SV, Yang S-P, Li XC, Graves T, Fulton L, Nelson J, Chinwalla A, Hou S, et al.. The genome of a songbird. Nature. 464(7289), pp.757 - 762 (2010).
Bradde S, Weigt M, Braunstein A, Zecchina R, Tria F, Mahmoudi H. Aligning graphs and finding substructures by message passing. Europhys. Lett. . 89(37009), (2010).
Angelini A, Amato A, Bianconi G, Bassetti B, Cosentino Lagomarsino M. Mean-field methods in evolutionary duplication-innovation-loss models for the genome-level repertoire of protein domains. Phys Rev E Stat Nonlin Soft Matter Phys. 81(2 Pt 1), pp.021919 (2010).
Kotar J, Leoni M, Bassetti B, Cosentino Lagomarsino M, Cicuta P. Hydrodynamic synchronization of colloidal oscillators. Proc Natl Acad Sci U S A. 107(17), pp.7669-73 (2010).
Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R. Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. BMC Bioinformatics. 11, pp.355 (2010).
Mathelier A, Carbone A. MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data. Bioinformatics. 26(18), pp.2226-34 (2010).
Garcia M, Delaveau T, Goussard S, Jacq C. Mitochondrial presequence and open reading frame mediate asymmetric localization of messenger RNA. EMBO Rep. 11(4), pp.285-91 (2010).
Jourdren L, Delaveau T, Marquenet E, Jacq C, Garcia M. CORSEN, a new software dedicated to microscope-based 3D distance measurements: mRNA-mitochondria distance, from single-cell to population analyses. RNA. 16(7), pp.1301-7 (2010).
Leoni M, Bassetti B, Kotar J, Cicuta P, Cosentino Lagomarsino M. Minimal two-sphere model of the generation of fluid flow at low Reynolds numbers. Phys Rev E Stat Nonlin Soft Matter Phys. 81(3 Pt 2), pp.036304 (2010).

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