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Publications

Osella M, Tans SJ, Cosentino Lagomarsino M.
Step by Step, Cell by Cell: Quantification of the Bacterial Cell Cycle.
Trends in MicrobiologyTrends in Microbiology. 25(4), pp.250 - 256 (2017).
Uguzzoni G, Lovis SJohn, Oteri F, Schug A, Szurmant H, Weigt M.
Large-scale identification of coevolution signals across homo-oligomeric protein interfaces by direct coupling analysis.
Proceedings of the National Academy of Sciences. 114, pp.E2662-E2671 (2017).
Amato A, Dell'Aquila G, Musacchia F, Annunziata R, Ugarte A, Maillet N, Carbone A, Riberà d'Alcalà M, Sanges R, Iudicone D, Ferrante MI.
Marine diatoms change their gene expression profile when exposed to microscale turbulence under nutrient replete conditions.
Scientific Reports. 7(1), (2017).
Oteri F, Nadalin F, Champeimont R, Carbone A.
BIS2Analyzer: a server for coevolution analysis of conserved protein families.
Nucleic Acids Research. (2017).
Yue J-X, Li J, Aigrain L, Hallin J, Persson K, Oliver K, Bergstrom A, Coupland P, Warringer J, Cosentino Lagomarsino M, Fischer G, Durbin R, Liti G.
Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
Nat Genet. 49(6), pp.913-924 (2017).
Lepetit B, Gelin G, Lepetit M, Sturm S, Vugrinec S, Rogato A, Peter K, Falciatore A, Lavaud J.
The diatom Phaeodactylum tricornutum adjusts NPQ capacity in response to dynamic light via fine-tuned Lhcx and xanthophyll cycle pigment synthesis.
New Phytologist. 214(1), pp.1469-8137 (2017).
Laine E, Carbone A.
Protein social behaviour makes a stronger signal for partner identification than surface geometry.
Proteins. 85(1), pp.137-154 (2017).
Klionsky DJ.
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Autophagy. 12, pp.1-222 (2016).
Berger H, De Mia M, Morisse S, Marchand CH, Lemaire SD, Wobbe L, Kruse O.
A Light Switch Based on Protein S-Nitrosylation Fine-Tunes Photosynthetic Light Harvesting in Chlamydomonas.
Plant Physiol. 171, pp.821-32 (2016).
Gütle DD, Roret T, Muller SJ, Couturier J, Lemaire SD, Hecker A, Dhalleine T, Buchanan BB, Reski R, Einsle O, Jacquot JP.
Chloroplast FBPase and SBPase are thioredoxin-linked enzymes with similar architecture but different evolutionary histories.
Proc Natl Acad Sci U S A. 113, pp.6779-84 (2016).
Perez-Perez ME, Lemaire SD, Crespo JL.
Control of Autophagy in Chlamydomonas Is Mediated through Redox-Dependent Inactivation of the ATG4 Protease.
Plant Physiol. 172, pp.2219-2234 (2016).
Zaffagnini M, De Mia M, Morisse S, Di Giacinto N, Marchand CH, Maes A, Lemaire SD, Trost P.
Protein S-nitrosylation in photosynthetic organisms: A comprehensive overview with future perspectives.
Biochim Biophys Acta. 1864, pp.952-66 (2016).
Si Y, Grazon C, Clavier G, Rieger J, Audibert J-F, Sclavi B, Méallet-Renault R.
Rapid and accurate detection of Escherichia coli growth by fluorescent pH-sensitive organic nanoparticles for high-throughput screening applications.
Biosens Bioelectron. 75, pp.320-7 (2016).
Baud A, Gonnet F, Salard I, Le Mignon M, Giuliani A, Mercère P, Sclavi B, Daniel R.
Probing the solution structure of Factor H using hydroxyl radical protein footprinting and cross-linking.
Biochem J. 473(12), pp.1805-19 (2016).
Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft J-U, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H, Soyer OS.
Challenges in microbial ecology: building predictive understanding of community function and dynamics.
ISME J. 10(11), pp.2557-2568 (2016).

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