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Publications

Oteri F, Falconi M, Chillemi G, Andersen FF, Oliveira CLP, Pedersen JS, Knudsen BR, Desideri A. Simulative Analysis of a Truncated Octahedral DNA Nanocage Family Indicates the Single-Stranded Thymidine Linkers as the Major Player for the Conformational Variability. J. Phys. Chem. C. 115, pp.16819–16827 (2011).
Carbone A, Dib L. Co-evolution and information signals in biological sequences. Theoretical Computer Science. 412, pp.2486 - 2495 (2011).
Goudot C, Etchebest C, Devaux F, Lelandais G. The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins. PLoS One. 6(6), pp.e20924 (2011).
Procaccini A, Lunt B, Szurmant H, Hwa T, Weigt M. Dissecting the Specificity of Protein-Protein Interaction in Bacterial Two-Component Signaling: Orphans and Crosstalks. Rattray M (Eds.). PLoS One. 6, pp.e19729 (2011).
Drillon G, Fischer G. Comparative study on synteny between yeasts and vertebrates. C R Biol. 334(8-9), pp.629-38 (2011).
Pakdaman K, Perthame B, Salort D. Relaxation and self-sustained oscillations in the time elapsed neuron network model. ArXiv e-prints. (2011).
Mäder U, Nicolas P, Richard H, Bessières P, Aymerich S. Comprehensive identification and quantification of microbial transcriptomes by genome-wide unbiased methods. Curr Opin Biotechnol. 22(1), pp.32-41 (2011).
Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M. Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proceedings of the National Academy of Sciences. 108, pp.E1293-E1301 (2011).
Bruot N, Damet L, Kotar J, Cicuta P, Cosentino Lagomarsino M. Noise and synchronization of a single active colloid. Phys Rev Lett. 107(9), pp.094101 (2011).
Bernardes JS, Carbone A, Zaverucha G. A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models. BMC Bioinformatics. 12, pp.83 (2011).
Grant MAA, Saggioro C, Ferrari U, Bassetti B, Sclavi B, Cosentino Lagomarsino M. DnaA and the timing of chromosome replication in Escherichia coli as a function of growth rate. BMC Syst Biol. 5, pp.201 (2011).
Scolari VF, Bassetti B, Sclavi B, Cosentino Lagomarsino M. Gene clusters reflecting macrodomain structure respond to nucleoid perturbations. Mol Biosyst. 7(3), pp.878-88 (2011).
Lelandais G, Goudot C, Devaux F. The evolution of gene expression regulatory networks in yeasts. C R Biol. 334(8-9), pp.655-61 (2011).
Bietti S, Somaschini C, Sarti E, Koguchi N, Sanguinetti S, Isella G, Chrastina D, Fedorov A. Photoluminescence Study of Low Thermal Budget III–V Nanostructures on Silicon by Droplet Epitaxy. Nanoscale Research Letters. 5(10), pp.1650 (2010).
Adrover M, Pauwels K, Prigent S, de Chiara C, Xu Z, Chapuis C, Pastore A, Rezaei H. Prion fibrillization is mediated by a native structural element that comprises helices H2 and H3. J Biol Chem. 285(27), pp.21004-12 (2010).

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