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Publications

Vavitsas K, Crozet P, Vinde MH, Davies F, Lemaire SD, Vickers CE. The Synthetic Biology Toolkit for Photosynthetic Microorganisms. Plant Physiol. 181, pp.14-27 (2019).
Zaffagnini M, Fermani S, Marchand CH, Costa A, Sparla F, Rouhier N, Geigenberger P, Lemaire SD, Trost P. Redox Homeostasis in Photosynthetic Organisms: Novel and Established Thiol-Based Molecular Mechanisms. Antioxid Redox Signal. 31, pp.155-210 (2019).
de Carpentier F, Lemaire SD, Danon A. When Unity Is Strength: The Strategies Used by Chlamydomonas to Survive Environmental Stresses. Cells. 8, (2019).
Zaffagnini M, Marchand CH, Malferrari M, Murail S, Bonacchi S, Genovese D, Montalti M, Venturoli G, Falini G, Baaden M, Lemaire SD, Fermani S, Trost P. Glutathionylation primes soluble glyceraldehyde-3-phosphate dehydrogenase for late collapse into insoluble aggregates. Proc Natl Acad Sci U S A. 116, pp.26057-26065 (2019).
De Mia M, Lemaire SD, Choquet Y, Wollman FA. Nitric Oxide Remodels the Photosynthetic Apparatus upon S-Starvation in Chlamydomonas reinhardtii. Plant Physiol. 179, pp.718-731 (2019).
Gurrieri L, Del Giudice A, Demitri N, Falini G, Pavel NV, Zaffagnini M, Polentarutti M, Crozet P, Marchand CH, Henri J, Trost P, Lemaire SD, Sparla F, Fermani S. Arabidopsis and Chlamydomonas phosphoribulokinase crystal structures complete the redox structural proteome of the Calvin-Benson cycle. Proc Natl Acad Sci U S A. 116, pp.8048-8053 (2019).
Reimer JM, Eivaskhani M, Harb I, Guarné A, Weigt M, T. Schmeing M. Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility. Science. 366, (2019).
Rodriguez-Horta E, Barrat-Charlaix P, Weigt M. Toward Inferring Potts Models for Phylogenetically Correlated Sequence Data. Entropy. 21, pp.1090 (2019).
Croce G, Gueudré T, Cuevas MVirginia R, Keidel V, Figliuzzi M, Szurmant H, Weigt M. A multi-scale coevolutionary approach to predict interactions between protein domains. PLOS Computational BiologyPLOS Computational Biology. 15(10), pp.e1006891 - (2019).
Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu R-R, Xu X-M, Shi H, Chang S, Eisenstein M, Karczynska A, Czaplewski C, Lubecka E, Lipska A, Krupa P, Mozolewska M, Golon Ł, Samsonov S, Liwo A, Crivelli S, Pagès G, Karasikov M, Kadukova M, Yan Y, Huang S-Y, Rosell M, Rodríguez-Lumbreras LAngel, Romero-Durana M, Díaz-Bueno L, Fernandez-Recio J, Christoffer C, Terashi G, Shin W-H, Aderinwale T, Subraman SRaghavendr, Kihara D, Kozakov D, Vajda S, Porter K, Padhorny D, Desta I, Beglov D, Ignatov M, Kotelnikov S, Moal IH, Ritchie DW, de Beauchêne IChauvot, Maigret B, Devignes M-D, Echartea MElisa Ruiz, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Cao Y, Shen Y, Baek M, Park T, Woo H, Seok C, Braitbard M, Bitton L, Scheidman-Duhovny D, DapkŪnas J, Olechnovič K, Venclovas Č, Kundrotas PJ, Belkin S, Chakravarty D, Badal VD, Vakser IA, Vreven T, Vangaveti S, Borrman T, et al.. Blind prediction of homo- and hetero- protein complexes: The CASP13-CAPRI experiment. Proteins: Structure, Function, and BioinformaticsProteins: Structure, Function, and BioinformaticsProteins. (ja), (2019).
Marmier G, Weigt M, Bitbol A-F. Phylogenetic correlations can suffice to infer protein partners from sequences. PLOS Computational BiologyPLOS Computational Biology. 15(10), pp.e1007179 - (2019).
Nguyen TN, Clairambault J, Jaffredo T, Perthame B, Salort D. Adaptive dynamics of hematopoietic stem cells and their supporting stroma: A model and mathematical analysis. Mathematical Biosciences and Engineering. (2019).
Laine E, Karami Y, Carbone A. GEMME: A Simple and Fast Global Epistatic Model Predicting Mutational Effects. Molecular Biology and Evolution. (2019).
Cáceres MJ, Roux P, Salort D, Schneider R. Global-in-time classical solutions and qualitative properties for the NNLIF neuron model with synaptic delay. Communication in Partial Differential Equations. (2019).
Shimagaki K, Weigt M. Selection of sequence motifs and generative Hopfield-Potts models for protein families. Phys. Rev. E. 100, pp.032128 (2019).

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