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Publications

Laine E, Auclair C, Tchertanov L.
Allosteric communication across the native and mutated KIT receptor tyrosine kinase.
PLoS Comput Biol. 8(8), pp.e1002661 (2012).
Benza VG, Bassetti B, Dorfman KD, Scolari VF, Bromek K, Cicuta P, Cosentino Lagomarsino M.
Physical descriptions of the bacterial nucleoid at large scales, and their biological implications.
Rep Prog Phys. 75(7), pp.076602 (2012).
Sułkowska JI, Morcos F, Weigt M, Hwa T, Onuchic JN.
Genomics-aided structure prediction.
Proc Natl Acad Sci U S A. 109(26), pp.10340-5 (2012).
Agier N, Fischer G.
The mutational profile of the yeast genome is shaped by replication.
Mol Biol Evol. 29(3), pp.905-13 (2012).
Xu Z, Adrover M, Pastore A, Prigent S, Mouthon F, Comoy E, Rezaei H, Deslys J-P.
Mechanistic insights into cellular alteration of prion by poly-D-lysine: the role of H2H3 domain.
FASEB J. 25(10), pp.3426-35 (2011).
Xu Z, Prigent S, Deslys J-P, Rezaei H.
Dual conformation of H2H3 domain of prion protein in mammalian cells.
J Biol Chem. 286(46), pp.40060-8 (2011).
Batorsky R, Kearney MF, Palmer SE, Maldarelli F, IM Rouzine, Coffin JM.
Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection.
Proc Natl Acad Sci U S A. 108(14), pp.5661-6 (2011).
Oteri F, Falconi M, Chillemi G, Andersen FF, Oliveira CLP, Pedersen JS, Knudsen BR, Desideri A.
Simulative Analysis of a Truncated Octahedral DNA Nanocage Family Indicates the Single-Stranded Thymidine Linkers as the Major Player for the Conformational Variability.
J. Phys. Chem. C. 115, pp.16819–16827 (2011).
Vassallo O, Castelli S, Biswas A, Sengupta S, Das PK, D’Annessa I, Oteri F, Leoni A, Tagliatesta P, Majumder HK.
Conjugated eicosapentaenoic acid (cEPA) inhibits L. donovani topoisomerase I and has an antiproliferative activity against L. donovani promastigotes.
Open Antimicrob. Agents J. 3, pp.23–29 (2011).
Ciccacci C, Falconi M, Paolillo N, Oteri F, Forte V, Novelli G, Desideri A, Borgiani P.
Characterization of a novel CYP2C9 gene mutation and structural bioinformatic protein analysis in a warfarin hypersensitive patient.
Pharmacogenet Genomics. 21(6), pp.344-6 (2011).
Falconi M, Oteri F, Di Palma F, Pandey S, Battistoni A, Desideri A.
Structural-dynamical investigation of the ZnuA histidine-rich loop: involvement in zinc management and transport.
J Comput Aided Mol Des. 25(2), pp.181-94 (2011).
Ceci P, Di Cecca G, Falconi M, Oteri F, Zamparelli C, Chiancone E.
Effect of the charge distribution along the "ferritin-like" pores of the proteins from the Dps family on the iron incorporation process.
J Biol Inorg Chem. 16(6), pp.869-80 (2011).
Carbone A, Dib L.
Co-evolution and information signals in biological sequences.
Theoretical Computer Science. 412, pp.2486 - 2495 (2011).
Procaccini A, Lunt B, Szurmant H, Hwa T, Weigt M.
Dissecting the Specificity of Protein-Protein Interaction in Bacterial Two-Component Signaling: Orphans and Crosstalks.
Rattray M (Eds.). PLoS One. 6, pp.e19729 (2011).
Goudot C, Etchebest C, Devaux F, Lelandais G.
The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins.
PLoS One. 6(6), pp.e20924 (2011).

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