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Publications

Jourdren L, Delaveau T, Marquenet E, Jacq C, Garcia M.
CORSEN, a new software dedicated to microscope-based 3D distance measurements: mRNA-mitochondria distance, from single-cell to population analyses.
RNA. 16(7), pp.1301-7 (2010).
Heijde M, Zabulon G, Corellou F, Ishikawa T, Brazard J, Usman A, Sanchez F, Plaza P, Martin M, Falciatore A, Todo T, Bouget F-Y, Bowler C.
Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes.
Plant Cell Environ. 33(10), pp.1614-26 (2010).
Mathelier A, Carbone A.
MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data.
Bioinformatics. 26(18), pp.2226-34 (2010).
Laine E, Goncalves C, Karst JC, Lesnard A, Rault S, Tang W-J, Malliavin TE, Ladant D, Blondel A.
Use of allostery to identify inhibitors of calmodulin-induced activation of Bacillus anthracis edema factor.
Proc Natl Acad Sci U S A. 107(25), pp.11277-82 (2010).
Angelini A, Amato A, Bianconi G, Bassetti B, Cosentino Lagomarsino M.
Mean-field methods in evolutionary duplication-innovation-loss models for the genome-level repertoire of protein domains.
Phys Rev E Stat Nonlin Soft Matter Phys. 81(2 Pt 1), pp.021919 (2010).
Bowler C, De Martino A, Falciatore A.
Diatom cell division in an environmental context.
Curr Opin Plant Biol. 13(6), pp.623-30 (2010).
Mathelier A, Carbone A.
Chromosomal periodicity and positional networks of genes in Escherichia coli.
Mol Syst Biol. 6, pp.366 (2010).
Fusco D, Grassi L, Bassetti B, Caselle M, Cosentino Lagomarsino M.
Ordered structure of the transcription network inherited from the yeast whole-genome duplication.
BMC Syst Biol. 4, pp.77 (2010).
Bailleul B, Rogato A, De Martino A, Coesel S, Cardol P, Bowler C, Falciatore A, Finazzi G.
An atypical member of the light-harvesting complex stress-related protein family modulates diatom responses to light.
Proc Natl Acad Sci U S A. 107(42), pp.18214-9 (2010).
Richard H, Schulz MH, Sultan M, Nürnberger A, Schrinner S, Balzereit D, Dagand E, Rasche A, Lehrach H, Vingron M, Haas SA, Yaspo M-L.
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments.
Nucleic Acids Res. 38(10), pp.e112 (2010).
Kotar J, Leoni M, Bassetti B, Cosentino Lagomarsino M, Cicuta P.
Hydrodynamic synchronization of colloidal oscillators.
Proc Natl Acad Sci U S A. 107(17), pp.7669-73 (2010).
Rogozina A, Zaychikov E, Buckle M, Heumann H, Sclavi B.
DNA melting by RNA polymerase at the T7A1 promoter precedes the rate-limiting step at 37 degrees C and results in the accumulation of an off-pathway intermediate.
Nucleic Acids Res. 37(16), pp.5390-404 (2009).
Sclavi B
Chapter 2 Opening the DNA at the Promoter; The Energetic Challenge.
in RNA Polymerases as Molecular Motors. The Royal Society of Chemistry. pp. 38-68 (2009)
Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A.
Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.
PLoS Comput Biol. 5(1), pp.e1000267 (2009).
Ye S, Huber T, Vogel R, Sakmar TP.
FTIR analysis of GPCR activation using azido probes.
Nat Chem Biol. 5(6), pp.397 - 399 (2009).

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