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Publications

Gueudré T, Baldassi C, Pagnani A, Weigt M
Predicting Interacting Protein Pairs by Coevolutionary Paralog Matching.
in Protein-Protein Interaction Networks. Methods in Molecular Biology,. Edited by: Canzar S., Ringeling F. 2074, New York, NY. Humana. (2020)
Shao Z, Borde C, Marchand CH, Lemaire SD, Busson P, Gozlan JM, Escargueil A, Marechal V.
Detection of IgG directed against a recombinant form of Epstein-Barr virus BALF0/1 protein in patients with nasopharyngeal carcinoma.
Protein Expr Purif. 162, pp.44-50 (2019).
De Mia M, Lemaire SD, Choquet Y, Wollman FA.
Nitric Oxide Remodels the Photosynthetic Apparatus upon S-Starvation in Chlamydomonas reinhardtii.
Plant Physiol. 179, pp.718-731 (2019).
Vavitsas K, Crozet P, Vinde MH, Davies F, Lemaire SD, Vickers CE.
The Synthetic Biology Toolkit for Photosynthetic Microorganisms.
Plant Physiol. 181, pp.14-27 (2019).
Eberhard S, Valuchova S, Ravat J, Fulnecek J, Jolivet P, Bujaldon S, Lemaire SD, Wollman FA, Teixeira MT, Riha K, Xu Z.
Molecular characterization of Chlamydomonas reinhardtii telomeres and telomerase mutants.
Life Sci Alliance. 2, (2019).
Zaffagnini M, Fermani S, Marchand CH, Costa A, Sparla F, Rouhier N, Geigenberger P, Lemaire SD, Trost P.
Redox Homeostasis in Photosynthetic Organisms: Novel and Established Thiol-Based Molecular Mechanisms.
Antioxid Redox Signal. 31, pp.155-210 (2019).
Gurrieri L, Del Giudice A, Demitri N, Falini G, Pavel NV, Zaffagnini M, Polentarutti M, Crozet P, Marchand CH, Henri J, Trost P, Lemaire SD, Sparla F, Fermani S.
Arabidopsis and Chlamydomonas phosphoribulokinase crystal structures complete the redox structural proteome of the Calvin-Benson cycle.
Proc Natl Acad Sci U S A. 116, pp.8048-8053 (2019).
Zaffagnini M, Marchand CH, Malferrari M, Murail S, Bonacchi S, Genovese D, Montalti M, Venturoli G, Falini G, Baaden M, Lemaire SD, Fermani S, Trost P.
Glutathionylation primes soluble glyceraldehyde-3-phosphate dehydrogenase for late collapse into insoluble aggregates.
Proc Natl Acad Sci U S A. 116, pp.26057-26065 (2019).
Marchand CH, Fermani S, Rossi J, Gurrieri L, Tedesco D, Henri J, Sparla F, Trost P, Lemaire SD, Zaffagnini M.
Structural and Biochemical Insights into the Reactivity of Thioredoxin h1 from Chlamydomonas reinhardtii.
Antioxidants (Basel). 8, (2019).
de Carpentier F, Lemaire SD, Danon A.
When Unity Is Strength: The Strategies Used by Chlamydomonas to Survive Environmental Stresses.
Cells. 8, (2019).
Reimer JM, Eivaskhani M, Harb I, Guarné A, Weigt M, T. Schmeing M.
Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.
Science. 366, (2019).
Rodriguez-Horta E, Barrat-Charlaix P, Weigt M.
Toward Inferring Potts Models for Phylogenetically Correlated Sequence Data.
Entropy. 21, pp.1090 (2019).
Croce G, Gueudré T, Cuevas MVirginia R, Keidel V, Figliuzzi M, Szurmant H, Weigt M.
A multi-scale coevolutionary approach to predict interactions between protein domains.
PLOS Computational BiologyPLOS Computational Biology. 15(10), pp.e1006891 - (2019).
Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu R-R, Xu X-M, Shi H, Chang S, Eisenstein M, Karczynska A, Czaplewski C, Lubecka E, Lipska A, Krupa P, Mozolewska M, Golon Ł, Samsonov S, Liwo A, Crivelli S, Pagès G, Karasikov M, Kadukova M, Yan Y, Huang S-Y, Rosell M, Rodríguez-Lumbreras LAngel, Romero-Durana M, Díaz-Bueno L, Fernandez-Recio J, Christoffer C, Terashi G, Shin W-H, Aderinwale T, Subraman SRaghavendr, Kihara D, Kozakov D, Vajda S, Porter K, Padhorny D, Desta I, Beglov D, Ignatov M, Kotelnikov S, Moal IH, Ritchie DW, de Beauchêne IChauvot, Maigret B, Devignes M-D, Echartea MElisa Ruiz, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Cao Y, Shen Y, Baek M, Park T, Woo H, Seok C, Braitbard M, Bitton L, Scheidman-Duhovny D, DapkŪnas J, Olechnovič K, Venclovas Č, Kundrotas PJ, Belkin S, Chakravarty D, Badal VD, Vakser IA, Vreven T, Vangaveti S, Borrman T, et al..
Blind prediction of homo- and hetero- protein complexes: The CASP13-CAPRI experiment.
Proteins: Structure, Function, and BioinformaticsProteins: Structure, Function, and BioinformaticsProteins. (ja), (2019).
Marmier G, Weigt M, Bitbol A-F.
Phylogenetic correlations can suffice to infer protein partners from sequences.
PLOS Computational BiologyPLOS Computational Biology. 15(10), pp.e1007179 - (2019).

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