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Publications

Le Moigne T, Sarti E, Nourisson A, Carbone A, Lemaire SD, Henri J. Crystal structure of chloroplast fructose-1,6-bisphosphate aldolase from the green alga Chlamydomonas reinhardtii. Journal of Structural Biology. (2022).
Oteri F, Sarti E, Nadalin F, Carbone A. iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families. Nucleic Acids Research. (2022).
Makamte S, Thureau A, Jabrani A, Paquelin A, Plessis A, Sanial M, Rudenko O, Oteri F, Baaden M, Biou V. A large disordered region confers a wide spanning volume to vertebrate Suppressor of Fused as shown in a trans-species solution study. Journal of Structural Biology. pp.107853 (2022).
Vicedomini R, Bouly J-P, Laine E, Falciatore A, Carbone A. Multiple probabilistic models extract features from protein sequence data and resolve functional diversity of very different protein families. Molecular Biology and Evolution. 39(4), (2022).
Rodriguez-Rivas J, Croce G, Muscat M, Weigt M. Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes. Proceedings of the National Academy of Sciences. 119, (2022).
Dequeker C, Mohseni-Behbahani Y, David L, Laine E, Carbone A. From complete cross-docking to partners identification and binding sites predictions. PLOS Computational Biology. 18(1), (2022).
Roux P, Salort D. Towards a further understanding of the dynamics in the excitatory NNLIF neuron model: Blow-up and global existence. Kinetic & Related Models. 14, pp.819-846 (2021).
Muntoni AP, Pagnani A, Weigt M, Zamponi F. adabmDCA: adaptive Boltzmann machine learning for biological sequences. BMC Bioinformatics. 22(1), pp.528 (2021).
Bisardi M, Rodriguez-Rivas J, Zamponi F, Weigt M. Modeling Sequence-Space Exploration and Emergence of Epistatic Signals in Protein Evolution. Molecular Biology and Evolution. (2021).
Trinquier J, Uguzzoni G, Pagnani A, Zamponi F, Weigt M. Efficient generative modeling of protein sequences using simple autoregressive models. Nature Communications. 12(1), pp.5800 (2021).
Delaveau T, Thiebaut A, Benchouaia M, Merhej J, Devaux F. Yap5 Competes With Hap4 for the Regulation of Iron Homeostasis Genes in the Human Pathogen. Front Cell Infect Microbiol. 11, pp.731988 (2021).
Martin H, Doumic M, Teixeira MTeresa, Xu Z. Telomere shortening causes distinct cell division regimes during replicative senescence in Saccharomyces cerevisiae. Cell Biosci. 11(1), pp.180 (2021).
Shirogane Y, Rousseau E, Voznica J, Xiao Y, Su W, Catching A, Whitfield ZJ, Rouzine IM, Bianco S, Andino R. Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genome. bioRxiv. (2021).
Sokolovska N, Mohseni-Behbahani Y. Vanishing boosted weights: a consistent algorithm to learn interpretable rules. Pattern Recognition Letters. (2021).
Pérez-Pérez MEsther, Lemaire SD, Crespo JL. The ATG4 protease integrates redox and stress signals to regulate autophagy. Journal of Experimental Botany. 72, pp.3340-3351 (2021).

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