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Publications

Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, Schmidt D, O'Keeffe S, Haas S, Vingron M, Lehrach H, Yaspo M-L.
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.
Science. 321(5891), pp.956-60 (2008).
Payen C, Koszul R, Dujon B, Fischer G.
Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms.
PLoS Genet. 4(9), pp.e1000175 (2008).
Del Vescovo V, Casagrande V, Bianchi MM, Piccinni E, Frontali L, Militti C, Fardeau V, Devaux F, Di Sanza C, Presutti C, Negri R.
Role of Hog1 and Yaf9 in the transcriptional response of Saccharomyces cerevisiae to cesium chloride.
Physiol Genomics. 33(1), pp.110-20 (2008).
van den Heuvel MGL, Bondesan R, Cosentino Lagomarsino M, Dekker C.
Single-molecule observation of anomalous electrohydrodynamic orientation of microtubules.
Phys Rev Lett. 101(11), pp.118301 (2008).
Evdokimov AA, Sclavi B, Zinoviev VV, Malygin EG, Hattman S, Buckle M.
Study of bacteriophage T4-encoded Dam DNA (adenine-N6)-methyltransferase binding with substrates by rapid laser UV cross-linking.
J Biol Chem. 282(36), pp.26067-76 (2007).
Sclavi B, Beatty CM, Thach DS, Fredericks CE, Buckle M, Wolfe AJ.
The multiple roles of CRP at the complex acs promoter depend on activation region 2 and IHF.
Mol Microbiol. 65(2), pp.425-40 (2007).
Herrick J, Sclavi B.
Ribonucleotide reductase and the regulation of DNA replication: an old story and an ancient heritage.
Mol Microbiol. 63(1), pp.22-34 (2007).
Gheorghiu-Svirschevski S, IM Rouzine, Coffin JM.
Increasing sequence correlation limits the efficiency of recombination in a multisite evolution model.
Mol Biol Evol. 24(2), pp.574-86 (2007).
IM Rouzine, Coffin JM.
Highly fit ancestors of a partly sexual haploid population.
Theor Popul Biol. 71(2), pp.239-50 (2007).
Baussand J, Carbone A.
Metagénomique bactérienne et virale - nouvelles définitions d'espace microbien et nouveaux défis algorithmiques.
Technique et Sciences Informatiques, special issue on "Modeling, simulations in postgenomics", Hérmes. (2007).
Breton J, Bart-Delabesse E, Biligui S, Carbone A, Seiller X, Okome-Nkoumou M, Nzamba C, Kombila M, Accoceberry I, Thellier M.
New Highly Divergent rRNA Sequence among Biodiverse Genotypes of Enterocytozoon bieneusi Strains Isolated from Humans in Gabon and Cameroon.
Journal of Clinical Microbiology. 45, pp.2580-2589 (2007).
Cosentino Lagomarsino M, Sellerio A, Isambert H, Bassetti B
A large-scale evolutionary approach to the analysis of transcription networks.
in SYSBIOHEALTH Symposium. Milano. Locomia Innovazione Publ. . (2007)
Montsant A, Allen AE, Coesel S, De Martino A, Falciatore A, Mangogna M, Siaut M, Heijde M, Jabbari K, Maheswari U, Rayko E, Vardi A, Apt KE, Berges JA, Chiovitti A, Davis AK, Thamatrakoln K, Hadi MZ, Lane TW, J. Lippmeier C, Martinez D, Parker MS, Pazour GJ, Saito MA, Rokhsar DS, E. Armbrust V, Bowler C.
Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana.
Journal of Phycology. 43, pp.585–604 (2007).
Carbone A
Adaptation studied with the self-consistent codon index: genomic spaces, metabolic network comparison, minimal gene sets and viral classification.
in Proceedings of the Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics. Genopole, Evry. EDP Sciences. (2007)
Bassetti F, Cosentino Lagomarsino M, Mandrà S.
Exchangeable random networks.
Internet Mathematics. 4, pp.357–400 (2007).

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