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Publications

Palková Z, Devaux F, Icicová M, Mináriková L, Le Crom S, Jacq C. Ammonia pulses and metabolic oscillations guide yeast colony development. Mol Biol Cell. 13(11), pp.3901-14 (2002).
Marc P, Devaux F, Jacq C. yMGV: a database for visualization and data mining of published genome-wide yeast expression data. Nucleic Acids Res. 29(13), pp.E63-3 (2001).
IM Rouzine, Rodrigo A, Coffin JM. Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology. Microbiol Mol Biol Rev. 65(1), pp.151-85 (2001).
Gromov M, Carbone A. Mathematical slices of molecular biology. La Gazette des Mathématiciens, Société Mathématique de France, special edition. pp.11-80 (2001).
Fischer G, Neuveglise C, Durrens P, Gaillardin C, Dujon B. Evolution of gene order in the genomes of two related yeast species. Genome Res. 11(12), pp.2009-19 (2001).
Devaux F, Marc P, Bouchoux C, Delaveau T, Hikkel I, Potier MC, Jacq C. An artificial transcription activator mimics the genome-wide properties of the yeast Pdr1 transcription factor. EMBO Rep. 2(6), pp.493-8 (2001).
Devaux F, Marc P, Jacq C. Transcriptomes, transcription activators and microarrays. FEBS Lett. 498(2-3), pp.140-4 (2001).
Carbone A, Gromov M, Prusinkiewicz P. Pattern formation in biology, vision and dynamics. World Scientific Publishing Company. , (2000).
Bassetti B, Cosentino Lagomarsino M, Jona P. A model for the self-organization of microtubules driven by molecular motors. The European Physical Journal B-Condensed Matter and Complex Systems. 15, pp.483–492 (2000).
Falciatore A, Riberà d'Alcalà M, Croot P, Bowler C. Perception of environmental signals by a marine diatom. Science. 288(5475), pp.2363-6 (2000).
Fischer G, James SA, Roberts IN, Oliver SG, Louis EJ. Chromosomal evolution in Saccharomyces. Nature. 405(6785), pp.451-4 (2000).
IM Rouzine, Coffin JM Interplay Between Experiment and Theory in Development of a Working Model for {HIV}-1 Population Dynamics. in Origin and Evolution of Viruses. Elsevier. pp. 225–262 (1999)
IM Rouzine, Coffin JM. Search for the mechanism of genetic variation in the pro gene of human immunodeficiency virus. J Virol. 73(10), pp.8167-78 (1999).
IM Rouzine, Coffin JM. Linkage disequilibrium test implies a large effective population number for HIV in vivo. Proc Natl Acad Sci U S A. 96(19), pp.10758-63 (1999).
Leblanc C, Falciatore A, Watanabe M, Bowler C. Semi-quantitative RT-PCR analysis of photoregulated gene expression in marine diatoms. Plant Mol Biol. 40(6), pp.1031-44 (1999).

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