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Publications

Bottinelli A, Bassetti B, Cosentino Lagomarsino M, Gherardi M.
Influence of homology and node age on the growth of protein-protein interaction networks.
Phys Rev E Stat Nonlin Soft Matter Phys. 86(4 Pt 1), pp.041919 (2012).
Laine E, Auclair C, Tchertanov L.
Allosteric communication across the native and mutated KIT receptor tyrosine kinase.
PLoS Comput Biol. 8(8), pp.e1002661 (2012).
Benza VG, Bassetti B, Dorfman KD, Scolari VF, Bromek K, Cicuta P, Cosentino Lagomarsino M.
Physical descriptions of the bacterial nucleoid at large scales, and their biological implications.
Rep Prog Phys. 75(7), pp.076602 (2012).
Sułkowska JI, Morcos F, Weigt M, Hwa T, Onuchic JN.
Genomics-aided structure prediction.
Proc Natl Acad Sci U S A. 109(26), pp.10340-5 (2012).
Agier N, Fischer G.
The mutational profile of the yeast genome is shaped by replication.
Mol Biol Evol. 29(3), pp.905-13 (2012).
Scolari VF, Zarei M, Osella M, Cosentino Lagomarsino M.
NuST: analysis of the interplay between nucleoid organization and gene expression.
Bioinformatics. 28(12), pp.1643-4 (2012).
Grassi L, Grilli J, Cosentino Lagomarsino M.
Large-scale dynamics of horizontal transfers.
Mob Genet Elements. 2(3), pp.163-167 (2012).
Uhlendorf J, Miermont A, Delaveau T, Charvin G, Fages F, Bottani S, Batt G, Hersen P.
Long-term model predictive control of gene expression at the population and single-cell levels.
Proc Natl Acad Sci U S A. 109(35), pp.14271-6 (2012).
Cicuta GM, Onofri E, Cosentino Lagomarsino M, Cicuta P.
Patterns of synchronization in the hydrodynamic coupling of active colloids.
Phys Rev E Stat Nonlin Soft Matter Phys. 85(1 Pt 2), pp.016203 (2012).
Depauw FAngelique, Rogato A, Riberà d'Alcalà M, Falciatore A.
Exploring the molecular basis of responses to light in marine diatoms.
J Exp Bot. 63(4), pp.1575-91 (2012).
Xu Z, Prigent S, Deslys J-P, Rezaei H.
Dual conformation of H2H3 domain of prion protein in mammalian cells.
J Biol Chem. 286(46), pp.40060-8 (2011).
Xu Z, Adrover M, Pastore A, Prigent S, Mouthon F, Comoy E, Rezaei H, Deslys J-P.
Mechanistic insights into cellular alteration of prion by poly-D-lysine: the role of H2H3 domain.
FASEB J. 25(10), pp.3426-35 (2011).
Batorsky R, Kearney MF, Palmer SE, Maldarelli F, IM Rouzine, Coffin JM.
Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection.
Proc Natl Acad Sci U S A. 108(14), pp.5661-6 (2011).
Oteri F, Falconi M, Chillemi G, Andersen FF, Oliveira CLP, Pedersen JS, Knudsen BR, Desideri A.
Simulative Analysis of a Truncated Octahedral DNA Nanocage Family Indicates the Single-Stranded Thymidine Linkers as the Major Player for the Conformational Variability.
J. Phys. Chem. C. 115, pp.16819–16827 (2011).
Vassallo O, Castelli S, Biswas A, Sengupta S, Das PK, D’Annessa I, Oteri F, Leoni A, Tagliatesta P, Majumder HK.
Conjugated eicosapentaenoic acid (cEPA) inhibits L. donovani topoisomerase I and has an antiproliferative activity against L. donovani promastigotes.
Open Antimicrob. Agents J. 3, pp.23–29 (2011).

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