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Publications

Grilli J, Bassetti B, Maslov S, Cosentino Lagomarsino M.
Joint scaling laws in functional and evolutionary categories in prokaryotic genomes.
Nucleic Acids Res. 40(2), pp.530-40 (2012).
Bruot N, Kotar J, de Lillo F, Cosentino Lagomarsino M, Cicuta P.
Driving potential and noise level determine the synchronization state of hydrodynamically coupled oscillators.
Phys Rev Lett. 109(16), pp.164103 (2012).
Dib L, Carbone A.
CLAG: an unsupervised non hierarchical clustering algorithm handling biological data.
BMC Bioinformatics. 13, pp.194 (2012).
Grassi L, Caselle M, Lercher MJ, Cosentino Lagomarsino M.
Horizontal gene transfers as metagenomic gene duplications.
Mol Biosyst. 8(3), pp.790-5 (2012).
Dago AE, Schug A, Procaccini A, Hoch JA, Weigt M, Szurmant H.
Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis.
Proc Natl Acad Sci U S A. 109(26), pp.E1733-42 (2012).
Bottinelli A, Bassetti B, Cosentino Lagomarsino M, Gherardi M.
Influence of homology and node age on the growth of protein-protein interaction networks.
Phys Rev E Stat Nonlin Soft Matter Phys. 86(4 Pt 1), pp.041919 (2012).
Xu Z, Adrover M, Pastore A, Prigent S, Mouthon F, Comoy E, Rezaei H, Deslys J-P.
Mechanistic insights into cellular alteration of prion by poly-D-lysine: the role of H2H3 domain.
FASEB J. 25(10), pp.3426-35 (2011).
Xu Z, Prigent S, Deslys J-P, Rezaei H.
Dual conformation of H2H3 domain of prion protein in mammalian cells.
J Biol Chem. 286(46), pp.40060-8 (2011).
Batorsky R, Kearney MF, Palmer SE, Maldarelli F, IM Rouzine, Coffin JM.
Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection.
Proc Natl Acad Sci U S A. 108(14), pp.5661-6 (2011).
Vassallo O, Castelli S, Biswas A, Sengupta S, Das PK, D’Annessa I, Oteri F, Leoni A, Tagliatesta P, Majumder HK.
Conjugated eicosapentaenoic acid (cEPA) inhibits L. donovani topoisomerase I and has an antiproliferative activity against L. donovani promastigotes.
Open Antimicrob. Agents J. 3, pp.23–29 (2011).
Oteri F, Falconi M, Chillemi G, Andersen FF, Oliveira CLP, Pedersen JS, Knudsen BR, Desideri A.
Simulative Analysis of a Truncated Octahedral DNA Nanocage Family Indicates the Single-Stranded Thymidine Linkers as the Major Player for the Conformational Variability.
J. Phys. Chem. C. 115, pp.16819–16827 (2011).
Ceci P, Di Cecca G, Falconi M, Oteri F, Zamparelli C, Chiancone E.
Effect of the charge distribution along the "ferritin-like" pores of the proteins from the Dps family on the iron incorporation process.
J Biol Inorg Chem. 16(6), pp.869-80 (2011).
Ciccacci C, Falconi M, Paolillo N, Oteri F, Forte V, Novelli G, Desideri A, Borgiani P.
Characterization of a novel CYP2C9 gene mutation and structural bioinformatic protein analysis in a warfarin hypersensitive patient.
Pharmacogenet Genomics. 21(6), pp.344-6 (2011).
Falconi M, Oteri F, Di Palma F, Pandey S, Battistoni A, Desideri A.
Structural-dynamical investigation of the ZnuA histidine-rich loop: involvement in zinc management and transport.
J Comput Aided Mol Des. 25(2), pp.181-94 (2011).
Carbone A, Dib L.
Co-evolution and information signals in biological sequences.
Theoretical Computer Science. 412, pp.2486 - 2495 (2011).

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