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Publications

Marc P, Devaux F, Jacq C.
yMGV: a database for visualization and data mining of published genome-wide yeast expression data.
Nucleic Acids Res. 29(13), pp.E63-3 (2001).
IM Rouzine, Rodrigo A, Coffin JM.
Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology.
Microbiol Mol Biol Rev. 65(1), pp.151-85 (2001).
Gromov M, Carbone A.
Mathematical slices of molecular biology.
La Gazette des Mathématiciens, Société Mathématique de France, special edition. pp.11-80 (2001).
Devaux F, Marc P, Jacq C.
Transcriptomes, transcription activators and microarrays.
FEBS Lett. 498(2-3), pp.140-4 (2001).
Fischer G, Neuveglise C, Durrens P, Gaillardin C, Dujon B.
Evolution of gene order in the genomes of two related yeast species.
Genome Res. 11(12), pp.2009-19 (2001).
Devaux F, Marc P, Bouchoux C, Delaveau T, Hikkel I, Potier MC, Jacq C.
An artificial transcription activator mimics the genome-wide properties of the yeast Pdr1 transcription factor.
EMBO Rep. 2(6), pp.493-8 (2001).
Ralston CY, Sclavi B, Brenowitz M, Sullivan M, Chance MR.
The Early Folding Intermediates of the Tetrahymena Ribozyme are Kinetically Trapped.
J Biomol Struct Dyn. 17 Suppl 1, pp.195-200 (2000).
Sclavi B, Roux P
Kinetic analysis of enzyme-template interactions. Nucleotide incorporation by DNA-dependent RNA and DNA polymerases.
in DNA-protein Interactions: A Practical Approach. Edited by: Buckle, M and Travers, A. eds. Oxford, UK. Oxford University Press. pp. 239-256 (2000)
Ralston CY, Sclavi B, Sullivan M, Deras ML, Woodson SA, Chance MR, Brenowitz M.
Time-resolved synchrotron X-ray footprinting and its application to RNA folding.
Methods Enzymol. 317, pp.353-68 (2000).
Bassetti B, Cosentino Lagomarsino M, Jona P.
A model for the self-organization of microtubules driven by molecular motors.
The European Physical Journal B-Condensed Matter and Complex Systems. 15, pp.483–492 (2000).
Carbone A, Gromov M, Prusinkiewicz P.
Pattern formation in biology, vision and dynamics.
World Scientific Publishing Company. , (2000).
Fischer G, James SA, Roberts IN, Oliver SG, Louis EJ.
Chromosomal evolution in Saccharomyces.
Nature. 405(6785), pp.451-4 (2000).
Falciatore A, Riberà d'Alcalà M, Croot P, Bowler C.
Perception of environmental signals by a marine diatom.
Science. 288(5475), pp.2363-6 (2000).
IM Rouzine, Coffin JM
Interplay Between Experiment and Theory in Development of a Working Model for {HIV}-1 Population Dynamics.
in Origin and Evolution of Viruses. Elsevier. pp. 225–262 (1999)
IM Rouzine, Coffin JM.
Search for the mechanism of genetic variation in the pro gene of human immunodeficiency virus.
J Virol. 73(10), pp.8167-78 (1999).

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