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Publications

Menezes RA, Amaral C, Batista-Nascimento L, Santos C, Ferreira RBoavida, Devaux F, Eleutherio ECA, Rodrigues-Pousada C.
Contribution of Yap1 towards Saccharomyces cerevisiae adaptation to arsenic-mediated oxidative stress.
Biochem J. 414(2), pp.301-11 (2008).
Brunet E, IM Rouzine, Wilke CO.
The stochastic edge in adaptive evolution.
Genetics. 179(1), pp.603-20 (2008).
Dutta RN, IM Rouzine, Smith SD, Wilke CO, Novella IS.
Rapid adaptive amplification of preexisting variation in an RNA virus.
J Virol. 82(9), pp.4354-62 (2008).
IM Rouzine, Brunet E, Wilke CO.
The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation.
Theor Popul Biol. 73(1), pp.24-46 (2008).
Saint-Georges Y, Garcia M, Delaveau T, Jourdren L, Le Crom S, Lemoine S, Tanty V, Devaux F, Jacq C.
Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization.
PLOS ONE. 3, pp.1-12 (2008).
Ye S, Köhrer C, Huber T, Kazmi M, Sachdev P, C Y Yan E, Bhagat A, RajBhandary UL, Sakmar TP.
Site-specific incorporation of keto amino acids into functional G protein-coupled receptors using unnatural amino acid mutagenesis.
J Biol Chem. 283(3), pp.1525-33 (2008).
Falconi M, Oteri F, Eliseo T, Cicero DO, Desideri A.
MD simulations of papillomavirus DNA-E2 protein complexes hints at a protein structural code for DNA deformation.
Biophys J. 95(3), pp.1108-17 (2008).
Coesel S, Obornik M, Varela J, Falciatore A, Bowler C.
Evolutionary Origins and Functions of the Carotenoid Biosynthetic Pathway in Marine Diatoms.
Randau L (Eds.). PLoS ONE. 3(8), pp.e2896 (2008).
Cosentino Lagomarsino M, Bassetti B.
Systems Biology tra buzzword e realtà.
XlaTangente. 8, (2008).
Cosentino Lagomarsino M.
Corti circuiti batterici.
XlaTangente. 11, (2008).
Banerjee D, Lelandais G, Shukla S, Mukhopadhyay G, Jacq C, Devaux F, Prasad R.
Responses of pathogenic and nonpathogenic yeast species to steroids reveal the functioning and evolution of multidrug resistance transcriptional networks.
Eukaryot Cell. 7(1), pp.68-77 (2008).
Sacquin-Mora S, Carbone A, Lavery R.
Identification of Protein Interaction Partners and Protein–Protein Interaction Sites.
Journal of Molecular Biology. 382, pp.1276 - 1289 (2008).
Carbone A, Mathelier A.
Environmental and Physiological Insights from Microbial Genome Sequences.
Elements of Computational Systems Biology. pp.325–339 (2008).
Braunstein A, Pagnani A, Weigt M, Zecchina R.
Inference algorithms for gene networks: a statistical mechanics analysis.
Journal of Statistical Mechanics: Theory and Experiment. 2008, pp.P12001 (2008).
Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F.
Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata.
Genome Biol. 9(11), pp.R164 (2008).

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