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Publications

Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R.
Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach.
BMC Bioinformatics. 11, pp.355 (2010).
Garcia M, Delaveau T, Goussard S, Jacq C.
Mitochondrial presequence and open reading frame mediate asymmetric localization of messenger RNA.
EMBO Rep. 11(4), pp.285-91 (2010).
Leoni M, Bassetti B, Kotar J, Cicuta P, Cosentino Lagomarsino M.
Minimal two-sphere model of the generation of fluid flow at low Reynolds numbers.
Phys Rev E Stat Nonlin Soft Matter Phys. 81(3 Pt 2), pp.036304 (2010).
Pierobon P, Miné-Hattab J, Cappello G, Viovy J-L, Cosentino Lagomarsino M.
Separation of time scales in one-dimensional directed nucleation-growth processes.
Phys Rev E Stat Nonlin Soft Matter Phys. 82(6 Pt 1), pp.061904 (2010).
Jourdren L, Delaveau T, Marquenet E, Jacq C, Garcia M.
CORSEN, a new software dedicated to microscope-based 3D distance measurements: mRNA-mitochondria distance, from single-cell to population analyses.
RNA. 16(7), pp.1301-7 (2010).
Heijde M, Zabulon G, Corellou F, Ishikawa T, Brazard J, Usman A, Sanchez F, Plaza P, Martin M, Falciatore A, Todo T, Bouget F-Y, Bowler C.
Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes.
Plant Cell Environ. 33(10), pp.1614-26 (2010).
Mathelier A, Carbone A.
MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data.
Bioinformatics. 26(18), pp.2226-34 (2010).
Laine E, Goncalves C, Karst JC, Lesnard A, Rault S, Tang W-J, Malliavin TE, Ladant D, Blondel A.
Use of allostery to identify inhibitors of calmodulin-induced activation of Bacillus anthracis edema factor.
Proc Natl Acad Sci U S A. 107(25), pp.11277-82 (2010).
Angelini A, Amato A, Bianconi G, Bassetti B, Cosentino Lagomarsino M.
Mean-field methods in evolutionary duplication-innovation-loss models for the genome-level repertoire of protein domains.
Phys Rev E Stat Nonlin Soft Matter Phys. 81(2 Pt 1), pp.021919 (2010).
Bowler C, De Martino A, Falciatore A.
Diatom cell division in an environmental context.
Curr Opin Plant Biol. 13(6), pp.623-30 (2010).
Mathelier A, Carbone A.
Chromosomal periodicity and positional networks of genes in Escherichia coli.
Mol Syst Biol. 6, pp.366 (2010).
Fusco D, Grassi L, Bassetti B, Caselle M, Cosentino Lagomarsino M.
Ordered structure of the transcription network inherited from the yeast whole-genome duplication.
BMC Syst Biol. 4, pp.77 (2010).
Rogozina A, Zaychikov E, Buckle M, Heumann H, Sclavi B.
DNA melting by RNA polymerase at the T7A1 promoter precedes the rate-limiting step at 37 degrees C and results in the accumulation of an off-pathway intermediate.
Nucleic Acids Res. 37(16), pp.5390-404 (2009).
Sclavi B
Chapter 2 Opening the DNA at the Promoter; The Energetic Challenge.
in RNA Polymerases as Molecular Motors. The Royal Society of Chemistry. pp. 38-68 (2009)
Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A.
Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.
PLoS Comput Biol. 5(1), pp.e1000267 (2009).

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