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Publications

Annaluru N, Muller H, Mitchell LA, Ramalingam S, Stracquadanio G, Richardson SM, Dymond JS, Kuang Z, Scheifele LZ, Cooper EM, Cai Y, Zeller K, Agmon N, Han JS, Hadjithomas M, Tullman J, Caravelli K, Cirelli K, Guo Z, London V, Yeluru A, Murugan S, Kandavelou K, Agier N, Fischer G, Yang K, J Martin A, Bilgel M, Bohutski P, Boulier KM, Capaldo BJ, Chang J, Charoen K, Choi WJin, Deng P, DiCarlo JE, Doong J, Dunn J, Feinberg JI, Fernandez C, Floria CE, Gladowski D, Hadidi P, Ishizuka I, Jabbari J, Lau CYL, Lee PA, Li S, Lin D, Linder ME, Ling J, Liu J, Liu J, London M, Ma H, Mao J, McDade JE, McMillan A, Moore AM, Oh WChan, Ouyang Y, Patel R, Paul M, Paulsen LC, Qiu J, Rhee A, Rubashkin MG, Soh IY, Sotuyo NE, Srinivas V, Suarez A, Wong A, Wong R, Xie WRose, Xu Y, Yu AT, Koszul R, Bader JS, Boeke JD, Chandrasegaran S. Total synthesis of a functional designer eukaryotic chromosome. Science. 344(6179), pp.55-8 (2014).
Javer A, Kuwada NJ, Long Z, Benza VG, Dorfman KD, Wiggins PA, Cicuta P, Cosentino Lagomarsino M. Persistent super-diffusive motion of Escherichia coli chromosomal loci. Nat Commun. 5, pp.3854 (2014).
Rogato A, Richard H, Sarazin A, Voss B, Cheminant Navarro S, Champeimont R, Navarro L, Carbone A*, Hess WR, Falciatore A. The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum. BMC Genomics. 15, pp.698 (2014).
Oliveri P, Fortunato AE, Petrone L, Ishikawa-Fujiwara T, Kobayashi Y, Todo T, Antonova O, Arboleda E, Zantke J, Tessmar-Raible K, Falciatore A. The Cryptochrome/Photolyase Family in aquatic organisms. Mar Genomics. 14, pp.23-37 (2014).
Bowler C, Falciatore A. The molecular life of diatoms. Mar Genomics. (2014).
Louvel H, Gillet-Markowska A, Liti G, Fischer G. A set of genetically diverged Saccharomyces cerevisiae strains with markerless deletions of multiple auxotrophic genes. Yeast. 31(3), pp.91-101 (2014).
Daboussi F, Leduc S, Maréchal A, Dubois G, Guyot V, Perez-Michaut C, Amato A, Falciatore A, Juillerat A, Beurdeley M, Voytas DF, Cavarec L, Duchateau P. Genome engineering empowers the diatom Phaeodactylum tricornutum for biotechnology. Nat Commun. 5, pp.3831 (2014).
de Beauchêne IChauvot, Allain A, Panel N, Laine E, Trouvé A, Dubreuil P, Tchertanov L. Hotspot mutations in KIT receptor differentially modulate its allosterically coupled conformational dynamics: impact on activation and drug sensitivity. PLoS Comput Biol. 10(7), pp.e1003749 (2014).
Mota S, Vieira N, Barbosa S, Delaveau T, Torchet C, Le Saux A, Garcia M, Pereira A, Lemoine S, Coulpier F, Darzacq X, Benard L, Casal M, Devaux F, Paiva S. Role of the DHH1 gene in the regulation of monocarboxylic acids transporters expression in Saccharomyces cerevisiae. PLoS One. 9(11), pp.e111589 (2014).
Mirauta B, Nicolas P, Richard H. Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models. Bioinformatics. 30(10), pp.1409-16 (2014).
Thacker VV, Bromek K, Meijer B, Kotar J, Sclavi B, Cosentino Lagomarsino M, Keyser UF, Cicuta P. Bacterial nucleoid structure probed by active drag and resistive pulse sensing. Integr Biol (Camb). 6(2), pp.184-91 (2014).
Sarti E, Zamuner S, Cossio P, Laio A, Seno F, Trovato A. BACHSCORE. A tool for evaluating efficiently and reliably the quality of large sets of protein structures. Computer Physics Communications. 184(12), pp.2860 - 2865 (2013).
Bernardes JS, Pedreira CE. A Review of Protein Function Prediction Under Machine Learning Perspective. (2013).
Sakr S, Dutheil J, Saenkham P, Bottin H, Leplat C, Ortega-Ramos M, Aude J-C, Chapuis V, Guedeney G, Decottignies P, Lemaire SD, Cassier-Chauvat C, Chauvat F. The activity of the Synechocystis PCC6803 AbrB2 regulator of hydrogen production can be post-translationally controlled through glutathionylation. International Journal of Hydrogen Energy. 38, pp.13547-13555 (2013).
Marteyn B, Sakr S, Farci S, Bedhomme M, Chardonnet S, Decottignies P, Lemaire SD, Cassier-Chauvat C, Chauvat F. The Synechocystis PCC6803 MerA-like enzyme operates in the reduction of both mercury and uranium under the control of the glutaredoxin 1 enzyme. J Bacteriol. 195, pp.4138-45 (2013).

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