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Publications

Karami Y, Laine E, Carbone A*. Dissecting protein architecture with communication blocks and communicating segment pairs. BMC Bioinformatics. 17, pp.133–148 (2016).
Carbone A* L'encodage des réseaux évolutifs dans les protéines: de la séquence à la fonction. in Leçon de mathématiques d'aujourd'hui. Cassini. (2016)
Agier N, Fischer G A Versatile Procedure to Generate Genome-Wide Spatiotemporal Program of Replication in Yeast Species. in Yeast Functional Genomics. 1361, Springer New York. pp. 247-264 (2016)
Sarti E, Granata D, Seno F, Trovato A, Laio A. Native fold and docking pose discrimination by the same residue-based scoring function. Proteins: Structure, Function, and Bioinformatics. 83(4), pp.621 - 630 (2015).
Blaby IK, Blaby-Haas CE, Perez-Perez ME, Schmollinger S, Fitz-Gibbon S, Lemaire SD, Merchant SS. Genome-wide analysis on Chlamydomonas reinhardtii reveals the impact of hydrogen peroxide on protein stress responses and overlap with other stress transcriptomes. Plant J. 84, pp.974-988 (2015).
Chardonnet S, Sakr S, Cassier-Chauvat C, Le Marechal P, Chauvat F, Lemaire SD, Decottignies P. First proteomic study of S-glutathionylation in cyanobacteria. J Proteome Res. 14, pp.59-71 (2015).
Bravard A, Auvré F, Fantini D, Bernardino-Sgherri J, Sissoëff L, Daynac M, Xu Z, Etienne O, Dehen C, Comoy E, Boussin FD, Tell G, Deslys J-P, J Radicella P. The prion protein is critical for DNA repair and cell survival after genotoxic stress. Nucleic Acids Res. 43(2), pp.904-16 (2015).
Bourgeron T, Xu Z, Doumic M, Teixeira MTeresa. The asymmetry of telomere replication contributes to replicative senescence heterogeneity. Sci Rep. 5, pp.15326 (2015).
Xu Z, Fallet E, Paoletti C, Fehrmann S, Charvin G, Teixeira MTeresa. Two routes to senescence revealed by real-time analysis of telomerase-negative single lineages. Nat Commun. 6, pp.7680 (2015).
Razooky BS, Pai A, Aull K, IM Rouzine, Weinberger LS. A hardwired HIV latency program. Cell. 160(5), pp.990-1001 (2015).
IM Rouzine, Weinberger AD, Weinberger LS. An evolutionary role for HIV latency in enhancing viral transmission. Cell. 160(5), pp.1002-12 (2015).
Grassi L, Grilli J, Cosentino Lagomarsino M Metagenomic Potential for Understanding Horizontal Gene Transfer. in Encyclopedia of Metagenomics: Genes, Genomes and Metagenomes: Basics, Methods, Databases and Tools. Boston, MA. Springer US. pp. 416–420 (2015)
Adiciptaningrum A, Osella M, M Moolman C, Cosentino Lagomarsino M, Tans SJ. Stochasticity and homeostasis in the E. coli replication and division cycle. Sci Rep. 5, pp.18261 (2015).
Tang Q, Guittard-Crilat E, Maldiney R, Habricot Y, Miginiac E, Bouly J-P, Lebreton S. The mitogen-activated protein kinase phosphatase PHS1 regulates flowering in Arabidopsis thaliana. Planta. (2015).

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