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Publications

Cosentino Lagomarsino M, Jona P, Bassetti B
Randomization and feedback properties of directed graphs inspired by gene networks.
in Computational Methods in Systems Biology. Springer. pp. 227–241 (2006)
Carbone A.
Computational prediction of genomic functional cores specific to different microbes.
J Mol Evol. 63(6), pp.733-46 (2006).
Houalla R, Devaux F, Fatica A, Kufel J, Barrass D, Torchet C, Tollervey D.
Microarray detection of novel nuclear RNA substrates for the exosome.
Yeast. 23(6), pp.439-54 (2006).
Fischer G, Rocha EPC, Brunet F, Vergassola M, Dujon B.
Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages.
PLoS Genet. 2(3), pp.e32 (2006).
Koszul R, Dujon B, Fischer G.
Stability of large segmental duplications in the yeast genome.
Genetics. 172(4), pp.2211-22 (2006).
Sclavi B, Zaychikov E, Rogozina A, Walther F, Buckle M, Heumann H.
Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter.
Proc Natl Acad Sci U S A. 102(13), pp.4706-11 (2005).
IM Rouzine, Coffin JM.
Evolution of HIV Under Selection and Weak Recombination.
Genetics. (2005).
IM Rouzine, Coffin JM.
Evolution of Human Immunodeficiency Virus Under Selection and Weak Recombination.
Genetics. 170(1), pp.7 - 18 (2005).
Discher BM, Noy D, Strzalka J, Ye S, Moser CC, Lear JD, J Blasie K, P Dutton L.
Design of amphiphilic protein maquettes: controlling assembly, membrane insertion, and cofactor interactions.
Biochemistry. 44(37), pp.12329-43 (2005).
Ye S, Discher BM, Strzalka J, Xu T, Wu SP, Noy D, Kuzmenko I, Gog T, Therien MJ, P Dutton L, J Blasie K.
Amphiphilic four-helix bundle peptides designed for light-induced electron transfer across a soft interface.
Nano Lett. 5(9), pp.1658-67 (2005).
Carbone A, Pierce N (Eds.)
DNA Computing.
Proceedings of the 11th International Workshop on DNA Computing - DNA11. London (ON, Canada). LNCS 3892, Springer. (2005).
Carbone A.
Pathways of deduction.
Geometries of nature, living systems, human cognition - New Interactions of Mathematics with Natural Sciences and Humanities. (2005).
Miele V, Bourguignon P-Y, Robelin D, Nuel G, Richard H.
seq++: analyzing biological sequences with a range of Markov-related models.
Bioinformatics. 21, pp.2783-2784 (2005).
Cosentino Lagomarsino M, Jona P, Bassetti B.
The large-scale logico-chemical structure of a transcriptional regulation network.
eprint arXiv:q-bio/0502017. (2005).
Torchet C, Badis G, Devaux F, Costanzo G, Werner M, Jacquier A.
The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae.
RNA. 11(6), pp.928-38 (2005).

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