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Publications

Dib L, Carbone A. Protein Fragments: Functional and Structural Roles of Their Coevolution Networks. PLoS ONE. 7(11), pp.e48124 (2012).
Dhamgaye S, Bernard M, Lelandais G, Sismeiro O, Lemoine S, Coppée J-Y, Le Crom S, Prasad R, Devaux F. RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans. BMC Genomics. 13, pp.396 (2012).
Damet L, Cicuta GM, Kotar J, Cosentino Lagomarsino M, Cicuta P. Hydrodynamically synchronized states in active colloidal arrays. Soft Matter. 8, pp.8672–8678 (2012).
Grassi L, Caselle M, Lercher MJ, Cosentino Lagomarsino M. Horizontal gene transfers as metagenomic gene duplications. Mol Biosyst. 8(3), pp.790-5 (2012).
Bruot N, Kotar J, de Lillo F, Cosentino Lagomarsino M, Cicuta P. Driving potential and noise level determine the synchronization state of hydrodynamically coupled oscillators. Phys Rev Lett. 109(16), pp.164103 (2012).
Uhlendorf J, Miermont A, Delaveau T, Charvin G, Fages F, Bottani S, Batt G, Hersen P. Long-term model predictive control of gene expression at the population and single-cell levels. Proc Natl Acad Sci U S A. 109(35), pp.14271-6 (2012).
Benza VG, Bassetti B, Dorfman KD, Scolari VF, Bromek K, Cicuta P, Cosentino Lagomarsino M. Physical descriptions of the bacterial nucleoid at large scales, and their biological implications. Rep Prog Phys. 75(7), pp.076602 (2012).
Dago AE, Schug A, Procaccini A, Hoch JA, Weigt M, Szurmant H. Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis. Proc Natl Acad Sci U S A. 109(26), pp.E1733-42 (2012).
Dhamgaye S, Devaux F, Manoharlal R, Vandeputte P, Shah AHaseeb, Singh A, Blugeon C, Sanglard D, Prasad R. In vitro effect of malachite green on Candida albicans involves multiple pathways and transcriptional regulators UPC2 and STP2. Antimicrob Agents Chemother. 56(1), pp.495-506 (2012).
Laine E, Auclair C, Tchertanov L. Allosteric communication across the native and mutated KIT receptor tyrosine kinase. PLoS Comput Biol. 8(8), pp.e1002661 (2012).
Agier N, Fischer G. The mutational profile of the yeast genome is shaped by replication. Mol Biol Evol. 29(3), pp.905-13 (2012).
Cicuta GM, Onofri E, Cosentino Lagomarsino M, Cicuta P. Patterns of synchronization in the hydrodynamic coupling of active colloids. Phys Rev E Stat Nonlin Soft Matter Phys. 85(1 Pt 2), pp.016203 (2012).
Grassi L, Grilli J, Cosentino Lagomarsino M. Large-scale dynamics of horizontal transfers. Mob Genet Elements. 2(3), pp.163-167 (2012).
Sułkowska JI, Morcos F, Weigt M, Hwa T, Onuchic JN. Genomics-aided structure prediction. Proc Natl Acad Sci U S A. 109(26), pp.10340-5 (2012).
Dib L, Carbone A. CLAG: an unsupervised non hierarchical clustering algorithm handling biological data. BMC Bioinformatics. 13, pp.194 (2012).

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