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Publications

Koszul R, Fischer G. A prominent role for segmental duplications in modeling eukaryotic genomes. C R Biol. 332(2-3), pp.254-66 (2009).
Payen C, Fischer G, Marck C, Proux C, Sherman DJames, Coppée J-Y, Johnston M, Dujon B, Neuvéglise C. Unusual composition of a yeast chromosome arm is associated with its delayed replication. Genome Res. 19(10), pp.1710-21 (2009).
Ciandrini L, Maffi C, Motta A, Bassetti B, Cosentino Lagomarsino M. Feedback topology and XOR-dynamics in Boolean networks with varying input structure. Phys Rev E Stat Nonlin Soft Matter Phys. 80(2 Pt 2), pp.026122 (2009).
Bernardes JS, Fernandez JH, Vasconcelos ATereza R. Structural descriptor database: a new tool for sequence-based functional site prediction. BMC Bioinformatics. 9, pp.492 (2008).
Costa J, Bernardes JS, Santos V, Zaverucha G Remote Homology Detection Through Discriminative Statistical Relational Learning. in The European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases. (2008)
Menezes RA, Amaral C, Batista-Nascimento L, Santos C, Ferreira RBoavida, Devaux F, Eleutherio ECA, Rodrigues-Pousada C. Contribution of Yap1 towards Saccharomyces cerevisiae adaptation to arsenic-mediated oxidative stress. Biochem J. 414(2), pp.301-11 (2008).
Brunet E, IM Rouzine, Wilke CO. The stochastic edge in adaptive evolution. Genetics. 179(1), pp.603-20 (2008).
Dutta RN, IM Rouzine, Smith SD, Wilke CO, Novella IS. Rapid adaptive amplification of preexisting variation in an RNA virus. J Virol. 82(9), pp.4354-62 (2008).
IM Rouzine, Brunet E, Wilke CO. The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation. Theor Popul Biol. 73(1), pp.24-46 (2008).
Saint-Georges Y, Garcia M, Delaveau T, Jourdren L, Le Crom S, Lemoine S, Tanty V, Devaux F, Jacq C. Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization. PLOS ONE. 3, pp.1-12 (2008).
Ye S, Köhrer C, Huber T, Kazmi M, Sachdev P, C Y Yan E, Bhagat A, RajBhandary UL, Sakmar TP. Site-specific incorporation of keto amino acids into functional G protein-coupled receptors using unnatural amino acid mutagenesis. J Biol Chem. 283(3), pp.1525-33 (2008).
Coesel S, Obornik M, Varela J, Falciatore A, Bowler C. Evolutionary Origins and Functions of the Carotenoid Biosynthetic Pathway in Marine Diatoms. Randau L (Eds.). PLoS ONE. 3(8), pp.e2896 (2008).
Cosentino Lagomarsino M, Bassetti B. Systems Biology tra buzzword e realtà. XlaTangente. 8, (2008).
Cosentino Lagomarsino M. Corti circuiti batterici. XlaTangente. 11, (2008).
Banerjee D, Lelandais G, Shukla S, Mukhopadhyay G, Jacq C, Devaux F, Prasad R. Responses of pathogenic and nonpathogenic yeast species to steroids reveal the functioning and evolution of multidrug resistance transcriptional networks. Eukaryot Cell. 7(1), pp.68-77 (2008).

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