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Publications

Banerjee D, Lelandais G, Shukla S, Mukhopadhyay G, Jacq C, Devaux F, Prasad R.
Responses of pathogenic and nonpathogenic yeast species to steroids reveal the functioning and evolution of multidrug resistance transcriptional networks.
Eukaryot Cell. 7(1), pp.68-77 (2008).
Carbone A, Mathelier A.
Environmental and Physiological Insights from Microbial Genome Sequences.
Elements of Computational Systems Biology. pp.325–339 (2008).
Braunstein A, Pagnani A, Weigt M, Zecchina R.
Inference algorithms for gene networks: a statistical mechanics analysis.
Journal of Statistical Mechanics: Theory and Experiment. 2008, pp.P12001 (2008).
Rougemaille M, Dieppois G, Kisseleva-Romanova E, Gudipati RKanth, Lemoine S, Blugeon C, Boulay J, Jensen THeick, Stutz F, Devaux F, Libri D.
THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association.
Cell. 135(2), pp.308-21 (2008).
Baussand J, Carbone A.
Inconsistent distances in substitution matrices can be avoided by properly handling hydrophobic residues.
Evol Bioinform Online. 4, pp.255-61 (2008).
Salin H, Fardeau V, Piccini E, Lelandais G, Tanty V, Lemoine S, Jacq C, Devaux F.
Structure and properties of transcriptional networks driving selenite stress response in yeasts.
BMC Genomics. 9, pp.333 (2008).
Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, Schmidt D, O'Keeffe S, Haas S, Vingron M, Lehrach H, Yaspo M-L.
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.
Science. 321(5891), pp.956-60 (2008).
Payen C, Koszul R, Dujon B, Fischer G.
Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms.
PLoS Genet. 4(9), pp.e1000175 (2008).
Del Vescovo V, Casagrande V, Bianchi MM, Piccinni E, Frontali L, Militti C, Fardeau V, Devaux F, Di Sanza C, Presutti C, Negri R.
Role of Hog1 and Yaf9 in the transcriptional response of Saccharomyces cerevisiae to cesium chloride.
Physiol Genomics. 33(1), pp.110-20 (2008).
van den Heuvel MGL, Bondesan R, Cosentino Lagomarsino M, Dekker C.
Single-molecule observation of anomalous electrohydrodynamic orientation of microtubules.
Phys Rev Lett. 101(11), pp.118301 (2008).
Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F.
Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata.
Genome Biol. 9(11), pp.R164 (2008).
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret J-P, Chiovitti A, Choi CJae, Coesel S, De Martino A, J Detter C, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Le Secq M-POudot-, Napoli C, Obornik M, Parker MSchnitzler, Petit J-L, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, E Armbrust V, Green BR, Van de Peer Y, Grigoriev IV.
The Phaeodactylum genome reveals the evolutionary history of diatom genomes.
Nature. 456(7219), pp.239-44 (2008).
Carbone A.
Codon bias is a major factor explaining phage evolution in translationally biased hosts.
J Mol Evol. 66(3), pp.210-23 (2008).
Evdokimov AA, Sclavi B, Zinoviev VV, Malygin EG, Hattman S, Buckle M.
Study of bacteriophage T4-encoded Dam DNA (adenine-N6)-methyltransferase binding with substrates by rapid laser UV cross-linking.
J Biol Chem. 282(36), pp.26067-76 (2007).
Sclavi B, Beatty CM, Thach DS, Fredericks CE, Buckle M, Wolfe AJ.
The multiple roles of CRP at the complex acs promoter depend on activation region 2 and IHF.
Mol Microbiol. 65(2), pp.425-40 (2007).

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