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Publications

Dib L, Carbone A.
Protein Fragments: Functional and Structural Roles of Their Coevolution Networks.
PLoS ONE. 7(11), pp.e48124 (2012).
Dhamgaye S, Bernard M, Lelandais G, Sismeiro O, Lemoine S, Coppée J-Y, Le Crom S, Prasad R, Devaux F.
RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans.
BMC Genomics. 13, pp.396 (2012).
Damet L, Cicuta GM, Kotar J, Cosentino Lagomarsino M, Cicuta P.
Hydrodynamically synchronized states in active colloidal arrays.
Soft Matter. 8, pp.8672–8678 (2012).
Bruot N, Kotar J, de Lillo F, Cosentino Lagomarsino M, Cicuta P.
Driving potential and noise level determine the synchronization state of hydrodynamically coupled oscillators.
Phys Rev Lett. 109(16), pp.164103 (2012).
Dib L, Carbone A.
CLAG: an unsupervised non hierarchical clustering algorithm handling biological data.
BMC Bioinformatics. 13, pp.194 (2012).
Grassi L, Caselle M, Lercher MJ, Cosentino Lagomarsino M.
Horizontal gene transfers as metagenomic gene duplications.
Mol Biosyst. 8(3), pp.790-5 (2012).
Dago AE, Schug A, Procaccini A, Hoch JA, Weigt M, Szurmant H.
Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis.
Proc Natl Acad Sci U S A. 109(26), pp.E1733-42 (2012).
Bottinelli A, Bassetti B, Cosentino Lagomarsino M, Gherardi M.
Influence of homology and node age on the growth of protein-protein interaction networks.
Phys Rev E Stat Nonlin Soft Matter Phys. 86(4 Pt 1), pp.041919 (2012).
Laine E, Auclair C, Tchertanov L.
Allosteric communication across the native and mutated KIT receptor tyrosine kinase.
PLoS Comput Biol. 8(8), pp.e1002661 (2012).
Benza VG, Bassetti B, Dorfman KD, Scolari VF, Bromek K, Cicuta P, Cosentino Lagomarsino M.
Physical descriptions of the bacterial nucleoid at large scales, and their biological implications.
Rep Prog Phys. 75(7), pp.076602 (2012).
Sułkowska JI, Morcos F, Weigt M, Hwa T, Onuchic JN.
Genomics-aided structure prediction.
Proc Natl Acad Sci U S A. 109(26), pp.10340-5 (2012).
Agier N, Fischer G.
The mutational profile of the yeast genome is shaped by replication.
Mol Biol Evol. 29(3), pp.905-13 (2012).
Scolari VF, Zarei M, Osella M, Cosentino Lagomarsino M.
NuST: analysis of the interplay between nucleoid organization and gene expression.
Bioinformatics. 28(12), pp.1643-4 (2012).
Grassi L, Grilli J, Cosentino Lagomarsino M.
Large-scale dynamics of horizontal transfers.
Mob Genet Elements. 2(3), pp.163-167 (2012).
Uhlendorf J, Miermont A, Delaveau T, Charvin G, Fages F, Bottani S, Batt G, Hersen P.
Long-term model predictive control of gene expression at the population and single-cell levels.
Proc Natl Acad Sci U S A. 109(35), pp.14271-6 (2012).

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