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Publications

Baussand J, Carbone A.
A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence.
PLoS Comput Biol. 5(9), pp.e1000488 (2009).
Schug A, Weigt M, Onuchic JN, Hwa T, Szurmant H.
High-resolution protein complexes from integrating genomic information with molecular simulation.
Proc Natl Acad Sci U S A. 106(52), pp.22124-9 (2009).
Souciet J-L, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, Artiguenave F, Anthouard V, Vacherie B, Val M-E, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret M-L, Casaregola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, De Montigny J, Neuvéglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goëffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard G-F, Sacerdot C, Straub M-L, Talla E.
Comparative genomics of protoploid Saccharomycetaceae.
Genome Res. 19(10), pp.1696-709 (2009).
Cosentino Lagomarsino M, Sellerio AL, Heijning PD, Bassetti B.
Universal features in the genome-level evolution of protein domains.
Genome Biol. 10(1), pp.R12 (2009).
Váchová L, Kučerová H, Devaux F, lehlová MÚ, Palková Z.
Metabolic diversification of cells during the development of yeast colonies.
Environ Microbiol. 11(2), pp.494-504 (2009).
Weigt M, White RA, Szurmant H, Hoch JA, Hwa T.
Identification of direct residue contacts in protein-protein interaction by message passing.
Proc Natl Acad Sci U S A. 106(1), pp.67-72 (2009).
Bailey AG, Lowe CP, Pagonabarraga I, Cosentino Lagomarsino M.
Accurate simulation dynamics of microscopic filaments using "caterpillar" Oseen hydrodynamics.
Phys Rev E Stat Nonlin Soft Matter Phys. 80(4 Pt 2), pp.046707 (2009).
Sclavi B.
Time-resolved footprinting for the study of the structural dynamics of DNA-protein interactions.
Biochem Soc Trans. 36(Pt 4), pp.745-8 (2008).
Menezes RA, Amaral C, Batista-Nascimento L, Santos C, Ferreira RBoavida, Devaux F, Eleutherio ECA, Rodrigues-Pousada C.
Contribution of Yap1 towards Saccharomyces cerevisiae adaptation to arsenic-mediated oxidative stress.
Biochem J. 414(2), pp.301-11 (2008).
Brunet E, IM Rouzine, Wilke CO.
The stochastic edge in adaptive evolution.
Genetics. 179(1), pp.603-20 (2008).
Dutta RN, IM Rouzine, Smith SD, Wilke CO, Novella IS.
Rapid adaptive amplification of preexisting variation in an RNA virus.
J Virol. 82(9), pp.4354-62 (2008).
IM Rouzine, Brunet E, Wilke CO.
The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation.
Theor Popul Biol. 73(1), pp.24-46 (2008).
Saint-Georges Y, Garcia M, Delaveau T, Jourdren L, Le Crom S, Lemoine S, Tanty V, Devaux F, Jacq C.
Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization.
PLOS ONE. 3, pp.1-12 (2008).
Ye S, Köhrer C, Huber T, Kazmi M, Sachdev P, C Y Yan E, Bhagat A, RajBhandary UL, Sakmar TP.
Site-specific incorporation of keto amino acids into functional G protein-coupled receptors using unnatural amino acid mutagenesis.
J Biol Chem. 283(3), pp.1525-33 (2008).
Falconi M, Oteri F, Eliseo T, Cicero DO, Desideri A.
MD simulations of papillomavirus DNA-E2 protein complexes hints at a protein structural code for DNA deformation.
Biophys J. 95(3), pp.1108-17 (2008).

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