You are here


Cosentino Lagomarsino M, Bassetti B, Castellani G, Remondini D. Functional models for large-scale gene regulation networks: realism and fiction. Mol Biosyst. 5(4), pp.335-44 (2009).
Baussand J, Carbone A. A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence. PLoS Comput Biol. 5(9), pp.e1000488 (2009).
Schug A, Weigt M, Onuchic JN, Hwa T, Szurmant H. High-resolution protein complexes from integrating genomic information with molecular simulation. Proc Natl Acad Sci U S A. 106(52), pp.22124-9 (2009).
Souciet J-L, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, Artiguenave F, Anthouard V, Vacherie B, Val M-E, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret M-L, Casaregola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, De Montigny J, Neuvéglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goëffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard G-F, Sacerdot C, Straub M-L, Talla E. Comparative genomics of protoploid Saccharomycetaceae. Genome Res. 19(10), pp.1696-709 (2009).
Cosentino Lagomarsino M, Sellerio AL, Heijning PD, Bassetti B. Universal features in the genome-level evolution of protein domains. Genome Biol. 10(1), pp.R12 (2009).
Váchová L, Kučerová H, Devaux F, lehlová MÚ, Palková Z. Metabolic diversification of cells during the development of yeast colonies. Environ Microbiol. 11(2), pp.494-504 (2009).
Weigt M, White RA, Szurmant H, Hoch JA, Hwa T. Identification of direct residue contacts in protein-protein interaction by message passing. Proc Natl Acad Sci U S A. 106(1), pp.67-72 (2009).
Bailey AG, Lowe CP, Pagonabarraga I, Cosentino Lagomarsino M. Accurate simulation dynamics of microscopic filaments using "caterpillar" Oseen hydrodynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 80(4 Pt 2), pp.046707 (2009).
Sellerio AL, Bassetti B, Isambert H, Cosentino Lagomarsino M. A comparative evolutionary study of transcription networks. The global role of feedback and hierachical structures. Mol Biosyst. 5(2), pp.170-9 (2009).
Fischer G, Thompson D, Wortman JRusso, Fairhead C. Unraveling the genomic diversity of small eukaryotes. Genome Biol. 10(12), pp.318 (2009).
Bassetti B, Zarei M, Cosentino Lagomarsino M, Bianconi G. Statistical mechanics of the "Chinese restaurant process": lack of self-averaging, anomalous finite-size effects, and condensation. Phys Rev E Stat Nonlin Soft Matter Phys. 80(6 Pt 2), pp.066118 (2009).
Coesel S, Mangogna M, Ishikawa T, Heijde M, Rogato A, Finazzi G, Todo T, Bowler C, Falciatore A. Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity. EMBO Rep. 10(6), pp.655-61 (2009).
Koszul R, Fischer G. A prominent role for segmental duplications in modeling eukaryotic genomes. C R Biol. 332(2-3), pp.254-66 (2009).
Bernardes JS, Fernandez JH, Vasconcelos ATereza R. Structural descriptor database: a new tool for sequence-based functional site prediction. BMC Bioinformatics. 9, pp.492 (2008).
Costa J, Bernardes JS, Santos V, Zaverucha G Remote Homology Detection Through Discriminative Statistical Relational Learning. in The European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases. (2008)