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Publications

Cosentino Lagomarsino M, Bassetti B. Systems Biology tra buzzword e realtà. XlaTangente. 8, (2008).
Cosentino Lagomarsino M. Corti circuiti batterici. XlaTangente. 11, (2008).
Sacquin-Mora S, Carbone A, Lavery R. Identification of Protein Interaction Partners and Protein–Protein Interaction Sites. Journal of Molecular Biology. 382, pp.1276 - 1289 (2008).
Banerjee D, Lelandais G, Shukla S, Mukhopadhyay G, Jacq C, Devaux F, Prasad R. Responses of pathogenic and nonpathogenic yeast species to steroids reveal the functioning and evolution of multidrug resistance transcriptional networks. Eukaryot Cell. 7(1), pp.68-77 (2008).
Braunstein A, Pagnani A, Weigt M, Zecchina R. Inference algorithms for gene networks: a statistical mechanics analysis. Journal of Statistical Mechanics: Theory and Experiment. 2008, pp.P12001 (2008).
Carbone A, Mathelier A. Environmental and Physiological Insights from Microbial Genome Sequences. Elements of Computational Systems Biology. pp.325–339 (2008).
Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, Schmidt D, O'Keeffe S, Haas S, Vingron M, Lehrach H, Yaspo M-L. A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science. 321(5891), pp.956-60 (2008).
Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F. Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata. Genome Biol. 9(11), pp.R164 (2008).
Carbone A. Codon bias is a major factor explaining phage evolution in translationally biased hosts. J Mol Evol. 66(3), pp.210-23 (2008).
Salin H, Fardeau V, Piccini E, Lelandais G, Tanty V, Lemoine S, Jacq C, Devaux F. Structure and properties of transcriptional networks driving selenite stress response in yeasts. BMC Genomics. 9, pp.333 (2008).
van den Heuvel MGL, Bondesan R, Cosentino Lagomarsino M, Dekker C. Single-molecule observation of anomalous electrohydrodynamic orientation of microtubules. Phys Rev Lett. 101(11), pp.118301 (2008).
Baussand J, Carbone A. Inconsistent distances in substitution matrices can be avoided by properly handling hydrophobic residues. Evol Bioinform Online. 4, pp.255-61 (2008).
Del Vescovo V, Casagrande V, Bianchi MM, Piccinni E, Frontali L, Militti C, Fardeau V, Devaux F, Di Sanza C, Presutti C, Negri R. Role of Hog1 and Yaf9 in the transcriptional response of Saccharomyces cerevisiae to cesium chloride. Physiol Genomics. 33(1), pp.110-20 (2008).
Rougemaille M, Dieppois G, Kisseleva-Romanova E, Gudipati RKanth, Lemoine S, Blugeon C, Boulay J, Jensen THeick, Stutz F, Devaux F, Libri D. THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association. Cell. 135(2), pp.308-21 (2008).
Payen C, Koszul R, Dujon B, Fischer G. Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms. PLoS Genet. 4(9), pp.e1000175 (2008).

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