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Publications

Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M. Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proceedings of the National Academy of Sciences. 108, pp.E1293-E1301 (2011).
Lelandais G, Goudot C, Devaux F. The evolution of gene expression regulatory networks in yeasts. C R Biol. 334(8-9), pp.655-61 (2011).
Bruot N, Damet L, Kotar J, Cicuta P, Cosentino Lagomarsino M. Noise and synchronization of a single active colloid. Phys Rev Lett. 107(9), pp.094101 (2011).
Bernardes JS, Carbone A, Zaverucha G. A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models. BMC Bioinformatics. 12, pp.83 (2011).
Grant MAA, Saggioro C, Ferrari U, Bassetti B, Sclavi B, Cosentino Lagomarsino M. DnaA and the timing of chromosome replication in Escherichia coli as a function of growth rate. BMC Syst Biol. 5, pp.201 (2011).
Scolari VF, Bassetti B, Sclavi B, Cosentino Lagomarsino M. Gene clusters reflecting macrodomain structure respond to nucleoid perturbations. Mol Biosyst. 7(3), pp.878-88 (2011).
Bietti S, Somaschini C, Sarti E, Koguchi N, Sanguinetti S, Isella G, Chrastina D, Fedorov A. Photoluminescence Study of Low Thermal Budget III–V Nanostructures on Silicon by Droplet Epitaxy. Nanoscale Research Letters. 5(10), pp.1650 (2010).
Adrover M, Pauwels K, Prigent S, de Chiara C, Xu Z, Chapuis C, Pastore A, Rezaei H. Prion fibrillization is mediated by a native structural element that comprises helices H2 and H3. J Biol Chem. 285(27), pp.21004-12 (2010).
Ye S, Berger AAnn, Petzold D, Reimann O, Matt B, Koksch B. Chemical aminoacylation of tRNAs with fluorinated amino acids for in vitro protein mutagenesis. O’Hagan D (Eds.). Beilstein Journal of Organic Chemistry. 6, pp.40 (2010).
IM Rouzine, Coffin JM. Multi-site adaptation in the presence of infrequent recombination. Theoretical population biology. 77, pp.189–204 (2010).
Sergeev RA, Batorsky RE, IM Rouzine. Model with two types of CTL regulation and experiments on CTL dynamics. J Theor Biol. 263(3), pp.369-84 (2010).
Ye S, Zaitseva E, Caltabiano G, Schertler GFX, Sakmar TP, Deupi X, Vogel R. Tracking G-protein-coupled receptor activation using genetically encoded infrared probes. Nature. 464(7293), pp.1386-9 (2010).
Pakdaman K, Perthame B, Salort D. Dynamics of a structured neuron population. Nonlinearity. 23, pp.55 (2010).
Bernicot F, Maury B, Salort D. A 2-adic approach of the human respiratory tree. ArXiv e-prints. (2010).
Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LDW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TAF, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Lin Y-C, George J, Sweedler J, Southey B, Gunaratne P, Watson M, Nam K, Backstrom N, Smeds L, Nabholz B, Itoh Y, Whitney O, Pfenning AR, Howard J, Volker M, Skinner BM, Griffin DK, Ye L, McLaren WM, Flicek P, Quesada V, Velasco G, Lopez-Otin C, Puente XS, Olender T, Lancet D, Smit AFA, Hubley R, Konkel MK, Walker JA, Batzer MA, Gu W, Pollock DD, Chen L, Cheng Z, Eichler EE, Stapley J, Slate J, Ekblom R, Birkhead T, Burke T, Burt D, Scharff C, Adam I, Richard H, Sultan M, Soldatov A, Lehrach H, Edwards SV, Yang S-P, Li XC, Graves T, Fulton L, Nelson J, Chinwalla A, Hou S, et al.. The genome of a songbird. Nature. 464(7289), pp.757 - 762 (2010).

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