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Publications

O'Donnell S, Chaux F, Fischer G.
Highly contiguous nanopore genome assembly of Chlamydomonas reinhardtii CC-1690.
Microbiol Resour Announc. (2020).
Cristofalo M, Marrano CA, Salerno D, Corti R, Cassina V, Sclavi B, Gherardi M, Mammola A, M. Lagomarsino C, Mantegazza F.
Cooperative effects on the compaction of DNA fragments by the nucleoid protein H-NS and the crowding agent PEG probed by Magnetic Tweezers.
Biochimica et Biophysica Acta (BBA) - General Subjects. 1864(12), pp.129725 (2020).
Gandarilla-Pérez CA, Mergny P, Weigt M, Bitbol A-F.
Statistical physics of interacting proteins: Impact of dataset size and quality assessed in synthetic sequences.
Phys. Rev. E. 101, pp.032413 (2020).
Russ WP, Figliuzzi M, Stocker C, Barrat-Charlaix P, Socolich M, Kast P, Hilvert D, Monasson R, Cocco S, Weigt M, Ranganathan R.
An evolution-based model for designing chorismate mutase enzymes.
Science. 369, pp.440–445 (2020).
Rouzine IM
Mathematical models of evolution. One-locus theory, multi-locus theory, and applications to virus evolution.
in Series in Mathematics and Life Sciences. Edited by: Anna Marciniak-Czochra, Benoît Perthame and Jean-Philippe Vert. De Gruyter. (2020)
Boto R, Peccati F, Laplaza R, Quan C, Carbone A, Piquemal J-P, Maday Y, Contreras-García J.
NCIPLOT4: fast, robust and quantitative analysis of noncovalent interactions.
Journal of Chemical Theory and Computation. pp.4150–4158 (2020).
Grudinin S, Laine E, Hoffmann A.
Predicting Protein Functional Motions: an Old Recipe with a New Twist.
Biophysical Journal. (2020).
Ait-hamlat A, Zea DJavier, Labeeuw A, Polit L, Richard H, Laine E.
Transcripts’ Evolutionary History and Structural Dynamics Give Mechanistic Insights into the Functional Diversity of the JNK Family.
Journal of Molecular Biology. (2020).
Teppa E, Zea D, Oteri F, Carbone A.
COVTree: Coevolution in OVerlapped sequences by Tree analysis server.
Nucleic Acids Research. (2020).
Drillon G, Champeimont R, Oteri F, Fischer G, Carbone A.
Phylogenetic reconstruction based on synteny block and gene adjacencies.
Molecular Biology and Evolution. 37(9), pp.2747–2762 (2020).
de Carpentier F, Le Peillet J, Boisset ND, Crozet P, Lemaire SD, Danon A.
Blasticidin S Deaminase: A New Efficient Selectable Marker for Chlamydomonas reinhardtii.
Frontiers in Plant Science. 11, (2020).
David L, Vicedomini R, Richard H, Carbone A.
Targeted domain assembly for fast functional profiling of metagenomic datasets with S3A.
Bioinformatics. (2020).
O'Donnell S, Fischer G.
MUM&Co: Accurate detection of all SV types through whole genome alignment.
Bioinformatics (Oxford, England). 36(10), pp.3242-3243 (2020).
Yousuf M, Iuliani I, Veetil RT, Seshasayee A S N, Sclavi B, Cosentino Lagomarsino M.
Early fate of exogenous promoters in E. coli.
Nucleic Acids Research. (2020).
Teppa E, Nadalin F, Combet C, Zea D, David L, Carbone A.
Coevolution analysis of amino-acids reveals diversified drug resistance solutions in viral sequences: a case study of hepatitis B virus.
Virus Evolution. 6(1), (2020).

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