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Publications

Mardones W, Villarroel CA, Krogerus K, Tapia SM, Urbina K, Oporto CI, O’Donnell S, Minebois R, Nespolo R, Fischer G, Querol A, Gibson B, Cubillos FA. Molecular profiling of beer wort fermentation diversity across natural Saccharomyces eubayanus isolates. Microbial Biotechnology. 13, pp.1012-1025 (2020).
Si Y, Grazon C, Clavier G, Rieger J, Tian Y, Audibert J-F, Sclavi B, Méallet-Renault R. Fluorescent copolymers for bacterial bioimaging and viability detection. ACS SensorsACS Sensors. (2020).
Crozat E, Tardin C, Salhi M, Rousseau P, Lablaine A, Bertoni T, Holcman D, Sclavi B, Cicuta P, Cornet F. Post-replicative pairing of sister ter regions in Escherichia coli involves multiple activities of MatP. Nature Commun. 11(1), pp.3796 (2020).
O'Donnell S, Chaux F, Fischer G. Highly contiguous nanopore genome assembly of Chlamydomonas reinhardtii CC-1690. Microbiol Resour Announc. (2020).
Cristofalo M, Marrano CA, Salerno D, Corti R, Cassina V, Sclavi B, Gherardi M, Mammola A, M. Lagomarsino C, Mantegazza F. Cooperative effects on the compaction of DNA fragments by the nucleoid protein H-NS and the crowding agent PEG probed by Magnetic Tweezers. Biochimica et Biophysica Acta (BBA) - General Subjects. 1864(12), pp.129725 (2020).
Gandarilla-Pérez CA, Mergny P, Weigt M, Bitbol A-F. Statistical physics of interacting proteins: Impact of dataset size and quality assessed in synthetic sequences. Phys. Rev. E. 101, pp.032413 (2020).
Muscat M, Croce G, Sarti E, Weigt M. FilterDCA: interpretable supervised contact prediction using inter-domain coevolution. PLOS Computational Biology. 16, (2020).
Russ WP, Figliuzzi M, Stocker C, Barrat-Charlaix P, Socolich M, Kast P, Hilvert D, Monasson R, Cocco S, Weigt M, Ranganathan R. An evolution-based model for designing chorismate mutase enzymes. Science. 369, pp.440–445 (2020).
Rouzine IM Mathematical models of evolution. One-locus theory, multi-locus theory, and applications to virus evolution. in Series in Mathematics and Life Sciences. Edited by: Anna Marciniak-Czochra, Benoît Perthame and Jean-Philippe Vert. De Gruyter. (2020)
Boto R, Peccati F, Laplaza R, Quan C, Carbone A, Piquemal J-P, Maday Y, Contreras-García J. NCIPLOT4: fast, robust and quantitative analysis of noncovalent interactions. Journal of Chemical Theory and Computation. pp.4150–4158 (2020).
Grudinin S, Laine E, Hoffmann A. Predicting Protein Functional Motions: an Old Recipe with a New Twist. Biophysical Journal. (2020).
Ait-hamlat A, Zea DJavier, Labeeuw A, Polit L, Richard H, Laine E. Transcripts’ Evolutionary History and Structural Dynamics Give Mechanistic Insights into the Functional Diversity of the JNK Family. Journal of Molecular Biology. (2020).
Drillon G, Champeimont R, Oteri F, Fischer G, Carbone A. Phylogenetic reconstruction based on synteny block and gene adjacencies. Molecular Biology and Evolution. 37(9), pp.2747–2762 (2020).
Teppa E, Zea D, Oteri F, Carbone A. COVTree: Coevolution in OVerlapped sequences by Tree analysis server. Nucleic Acids Research. (2020).
David L, Vicedomini R, Richard H, Carbone A. Targeted domain assembly for fast functional profiling of metagenomic datasets with S3A. Bioinformatics. (2020).

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