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Publications

Garcia M, Darzacq X, Devaux F, Singer RH, Jacq C. Yeast mitochondrial transcriptomics. Methods Mol Biol. 372, pp.505-28 (2007).
Fusco D, Bassetti B, Jona P, Cosentino Lagomarsino M. DIA-MCIS: an importance sampling network randomizer for network motif discovery and other topological observables in transcription networks. Bioinformatics. 23(24), pp.3388-90 (2007).
Llopis I, Pagonabarraga I, Cosentino Lagomarsino M, Lowe CP. Sedimentation of pairs of hydrodynamically interacting semiflexible filaments. Phys Rev E Stat Nonlin Soft Matter Phys. 76(6 Pt 1), pp.061901 (2007).
Leone M, Weigt M. Clustering by soft-constraint affinity propagation: applications to gene-expression data. Bioinformatics. 23(20), pp.2708-15 (2007).
Fardeau V, Lelandais G, Oldfield A, Salin H, Lemoine S, Garcia M, Tanty V, Le Crom S, Jacq C, Devaux F. The central role of PDR1 in the foundation of yeast drug resistance. J Biol Chem. 282(7), pp.5063-74 (2007).
IM Rouzine, Sergeev RA, Glushtsov AI. Two types of cytotoxic lymphocyte regulation explain kinetics of immune response to human immunodeficiency virus. Proc Natl Acad Sci U S A. 103(3), pp.666-71 (2006).
Sacquin-Mora S, Lavery R, Trojan LA, Carbone A Une opération de docking croisé à grande échelle pour la détection de partenaires protéiques potentiels. in Proceedings of the workshop "Mathématiques et Interactions". Paris France. Institut Henri Poincaré. (2006)
Cosentino Lagomarsino M, Jona P, Bassetti B Randomization and feedback properties of directed graphs inspired by gene networks. in Computational Methods in Systems Biology. Springer. pp. 227–241 (2006)
Fischer G, Rocha EPC, Brunet F, Vergassola M, Dujon B. Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages. PLoS Genet. 2(3), pp.e32 (2006).
Koszul R, Dujon B, Fischer G. Stability of large segmental duplications in the yeast genome. Genetics. 172(4), pp.2211-22 (2006).
Houalla R, Devaux F, Fatica A, Kufel J, Barrass D, Torchet C, Tollervey D. Microarray detection of novel nuclear RNA substrates for the exosome. Yeast. 23(6), pp.439-54 (2006).
Carbone A. Computational prediction of genomic functional cores specific to different microbes. J Mol Evol. 63(6), pp.733-46 (2006).
IM Rouzine, Coffin JM. Evolution of HIV Under Selection and Weak Recombination. Genetics. (2005).
IM Rouzine, Coffin JM. Evolution of Human Immunodeficiency Virus Under Selection and Weak Recombination. Genetics. 170(1), pp.7 - 18 (2005).
Discher BM, Noy D, Strzalka J, Ye S, Moser CC, Lear JD, J Blasie K, P Dutton L. Design of amphiphilic protein maquettes: controlling assembly, membrane insertion, and cofactor interactions. Biochemistry. 44(37), pp.12329-43 (2005).

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