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Publications

Carbone A.
Codon bias is a major factor explaining phage evolution in translationally biased hosts.
J Mol Evol. 66(3), pp.210-23 (2008).
Rougemaille M, Dieppois G, Kisseleva-Romanova E, Gudipati RKanth, Lemoine S, Blugeon C, Boulay J, Jensen THeick, Stutz F, Devaux F, Libri D.
THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association.
Cell. 135(2), pp.308-21 (2008).
Baussand J, Carbone A.
Inconsistent distances in substitution matrices can be avoided by properly handling hydrophobic residues.
Evol Bioinform Online. 4, pp.255-61 (2008).
Salin H, Fardeau V, Piccini E, Lelandais G, Tanty V, Lemoine S, Jacq C, Devaux F.
Structure and properties of transcriptional networks driving selenite stress response in yeasts.
BMC Genomics. 9, pp.333 (2008).
Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, Schmidt D, O'Keeffe S, Haas S, Vingron M, Lehrach H, Yaspo M-L.
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.
Science. 321(5891), pp.956-60 (2008).
Payen C, Koszul R, Dujon B, Fischer G.
Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms.
PLoS Genet. 4(9), pp.e1000175 (2008).
Del Vescovo V, Casagrande V, Bianchi MM, Piccinni E, Frontali L, Militti C, Fardeau V, Devaux F, Di Sanza C, Presutti C, Negri R.
Role of Hog1 and Yaf9 in the transcriptional response of Saccharomyces cerevisiae to cesium chloride.
Physiol Genomics. 33(1), pp.110-20 (2008).
van den Heuvel MGL, Bondesan R, Cosentino Lagomarsino M, Dekker C.
Single-molecule observation of anomalous electrohydrodynamic orientation of microtubules.
Phys Rev Lett. 101(11), pp.118301 (2008).
Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F.
Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata.
Genome Biol. 9(11), pp.R164 (2008).
Bernardes JS, Dávila AMR, Costa VS, Zaverucha G.
Improving model construction of profile HMMs for remote homology detection through structural alignment.
BMC Bioinformatics. 8, pp.435 (2007).
Evdokimov AA, Sclavi B, Zinoviev VV, Malygin EG, Hattman S, Buckle M.
Study of bacteriophage T4-encoded Dam DNA (adenine-N6)-methyltransferase binding with substrates by rapid laser UV cross-linking.
J Biol Chem. 282(36), pp.26067-76 (2007).
Sclavi B, Beatty CM, Thach DS, Fredericks CE, Buckle M, Wolfe AJ.
The multiple roles of CRP at the complex acs promoter depend on activation region 2 and IHF.
Mol Microbiol. 65(2), pp.425-40 (2007).
Herrick J, Sclavi B.
Ribonucleotide reductase and the regulation of DNA replication: an old story and an ancient heritage.
Mol Microbiol. 63(1), pp.22-34 (2007).
Gheorghiu-Svirschevski S, IM Rouzine, Coffin JM.
Increasing sequence correlation limits the efficiency of recombination in a multisite evolution model.
Mol Biol Evol. 24(2), pp.574-86 (2007).
IM Rouzine, Coffin JM.
Highly fit ancestors of a partly sexual haploid population.
Theor Popul Biol. 71(2), pp.239-50 (2007).

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