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Publications

Karami Y, fathy M, Khakzad H, Shirazi H, Arab S
Protein structure prediction using bio-inspired algorithm: A review.
in Artificial Intelligence and Signal Processing (AISP), 2012 16th CSI International Symposium on. (2012)
Di Marino D, Oteri F, Rocca BMorozzo de, D'Annessa I, Falconi M.
Mapping multiple potential ATP binding sites on the matrix side of the bovine ADP/ATP carrier by the combined use of MD simulation and docking.
J Mol Model. 18(6), pp.2377-86 (2012).
Dib L, Carbone A.
Protein Fragments: Functional and Structural Roles of Their Coevolution Networks.
PLoS ONE. 7(11), pp.e48124 (2012).
Dhamgaye S, Bernard M, Lelandais G, Sismeiro O, Lemoine S, Coppée J-Y, Le Crom S, Prasad R, Devaux F.
RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans.
BMC Genomics. 13, pp.396 (2012).
Damet L, Cicuta GM, Kotar J, Cosentino Lagomarsino M, Cicuta P.
Hydrodynamically synchronized states in active colloidal arrays.
Soft Matter. 8, pp.8672–8678 (2012).
Scolari VF, Zarei M, Osella M, Cosentino Lagomarsino M.
NuST: analysis of the interplay between nucleoid organization and gene expression.
Bioinformatics. 28(12), pp.1643-4 (2012).
Grassi L, Grilli J, Cosentino Lagomarsino M.
Large-scale dynamics of horizontal transfers.
Mob Genet Elements. 2(3), pp.163-167 (2012).
Uhlendorf J, Miermont A, Delaveau T, Charvin G, Fages F, Bottani S, Batt G, Hersen P.
Long-term model predictive control of gene expression at the population and single-cell levels.
Proc Natl Acad Sci U S A. 109(35), pp.14271-6 (2012).
Cicuta GM, Onofri E, Cosentino Lagomarsino M, Cicuta P.
Patterns of synchronization in the hydrodynamic coupling of active colloids.
Phys Rev E Stat Nonlin Soft Matter Phys. 85(1 Pt 2), pp.016203 (2012).
Depauw FAngelique, Rogato A, Riberà d'Alcalà M, Falciatore A.
Exploring the molecular basis of responses to light in marine diatoms.
J Exp Bot. 63(4), pp.1575-91 (2012).
Dhamgaye S, Devaux F, Manoharlal R, Vandeputte P, Shah AHaseeb, Singh A, Blugeon C, Sanglard D, Prasad R.
In vitro effect of malachite green on Candida albicans involves multiple pathways and transcriptional regulators UPC2 and STP2.
Antimicrob Agents Chemother. 56(1), pp.495-506 (2012).
Grilli J, Bassetti B, Maslov S, Cosentino Lagomarsino M.
Joint scaling laws in functional and evolutionary categories in prokaryotic genomes.
Nucleic Acids Res. 40(2), pp.530-40 (2012).
Bruot N, Kotar J, de Lillo F, Cosentino Lagomarsino M, Cicuta P.
Driving potential and noise level determine the synchronization state of hydrodynamically coupled oscillators.
Phys Rev Lett. 109(16), pp.164103 (2012).
Dib L, Carbone A.
CLAG: an unsupervised non hierarchical clustering algorithm handling biological data.
BMC Bioinformatics. 13, pp.194 (2012).
Grassi L, Caselle M, Lercher MJ, Cosentino Lagomarsino M.
Horizontal gene transfers as metagenomic gene duplications.
Mol Biosyst. 8(3), pp.790-5 (2012).

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