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Publications

Karami Y, fathy M, Khakzad H, Shirazi H, Arab S
Protein structure prediction using bio-inspired algorithm: A review.
in Artificial Intelligence and Signal Processing (AISP), 2012 16th CSI International Symposium on. (2012)
Di Marino D, Oteri F, Rocca BMorozzo de, D'Annessa I, Falconi M.
Mapping multiple potential ATP binding sites on the matrix side of the bovine ADP/ATP carrier by the combined use of MD simulation and docking.
J Mol Model. 18(6), pp.2377-86 (2012).
Dib L, Carbone A.
Protein Fragments: Functional and Structural Roles of Their Coevolution Networks.
PLoS ONE. 7(11), pp.e48124 (2012).
Dhamgaye S, Bernard M, Lelandais G, Sismeiro O, Lemoine S, Coppée J-Y, Le Crom S, Prasad R, Devaux F.
RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans.
BMC Genomics. 13, pp.396 (2012).
Damet L, Cicuta GM, Kotar J, Cosentino Lagomarsino M, Cicuta P.
Hydrodynamically synchronized states in active colloidal arrays.
Soft Matter. 8, pp.8672–8678 (2012).
Dhamgaye S, Devaux F, Manoharlal R, Vandeputte P, Shah AHaseeb, Singh A, Blugeon C, Sanglard D, Prasad R.
In vitro effect of malachite green on Candida albicans involves multiple pathways and transcriptional regulators UPC2 and STP2.
Antimicrob Agents Chemother. 56(1), pp.495-506 (2012).
Grilli J, Bassetti B, Maslov S, Cosentino Lagomarsino M.
Joint scaling laws in functional and evolutionary categories in prokaryotic genomes.
Nucleic Acids Res. 40(2), pp.530-40 (2012).
Bruot N, Kotar J, de Lillo F, Cosentino Lagomarsino M, Cicuta P.
Driving potential and noise level determine the synchronization state of hydrodynamically coupled oscillators.
Phys Rev Lett. 109(16), pp.164103 (2012).
Dib L, Carbone A.
CLAG: an unsupervised non hierarchical clustering algorithm handling biological data.
BMC Bioinformatics. 13, pp.194 (2012).
Grassi L, Caselle M, Lercher MJ, Cosentino Lagomarsino M.
Horizontal gene transfers as metagenomic gene duplications.
Mol Biosyst. 8(3), pp.790-5 (2012).
Dago AE, Schug A, Procaccini A, Hoch JA, Weigt M, Szurmant H.
Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis.
Proc Natl Acad Sci U S A. 109(26), pp.E1733-42 (2012).
Bottinelli A, Bassetti B, Cosentino Lagomarsino M, Gherardi M.
Influence of homology and node age on the growth of protein-protein interaction networks.
Phys Rev E Stat Nonlin Soft Matter Phys. 86(4 Pt 1), pp.041919 (2012).
Laine E, Auclair C, Tchertanov L.
Allosteric communication across the native and mutated KIT receptor tyrosine kinase.
PLoS Comput Biol. 8(8), pp.e1002661 (2012).
Benza VG, Bassetti B, Dorfman KD, Scolari VF, Bromek K, Cicuta P, Cosentino Lagomarsino M.
Physical descriptions of the bacterial nucleoid at large scales, and their biological implications.
Rep Prog Phys. 75(7), pp.076602 (2012).
Sułkowska JI, Morcos F, Weigt M, Hwa T, Onuchic JN.
Genomics-aided structure prediction.
Proc Natl Acad Sci U S A. 109(26), pp.10340-5 (2012).

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