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Publications

Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F. Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata. Genome Biol. 9(11), pp.R164 (2008).
Carbone A. Codon bias is a major factor explaining phage evolution in translationally biased hosts. J Mol Evol. 66(3), pp.210-23 (2008).
Salin H, Fardeau V, Piccini E, Lelandais G, Tanty V, Lemoine S, Jacq C, Devaux F. Structure and properties of transcriptional networks driving selenite stress response in yeasts. BMC Genomics. 9, pp.333 (2008).
van den Heuvel MGL, Bondesan R, Cosentino Lagomarsino M, Dekker C. Single-molecule observation of anomalous electrohydrodynamic orientation of microtubules. Phys Rev Lett. 101(11), pp.118301 (2008).
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret J-P, Chiovitti A, Choi CJae, Coesel S, De Martino A, J Detter C, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Le Secq M-POudot-, Napoli C, Obornik M, Parker MSchnitzler, Petit J-L, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, E Armbrust V, Green BR, Van de Peer Y, Grigoriev IV. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456(7219), pp.239-44 (2008).
Baussand J, Carbone A. Inconsistent distances in substitution matrices can be avoided by properly handling hydrophobic residues. Evol Bioinform Online. 4, pp.255-61 (2008).
Del Vescovo V, Casagrande V, Bianchi MM, Piccinni E, Frontali L, Militti C, Fardeau V, Devaux F, Di Sanza C, Presutti C, Negri R. Role of Hog1 and Yaf9 in the transcriptional response of Saccharomyces cerevisiae to cesium chloride. Physiol Genomics. 33(1), pp.110-20 (2008).
Rougemaille M, Dieppois G, Kisseleva-Romanova E, Gudipati RKanth, Lemoine S, Blugeon C, Boulay J, Jensen THeick, Stutz F, Devaux F, Libri D. THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association. Cell. 135(2), pp.308-21 (2008).
Payen C, Koszul R, Dujon B, Fischer G. Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms. PLoS Genet. 4(9), pp.e1000175 (2008).
Bernardes JS, Dávila AMR, Costa VS, Zaverucha G. Improving model construction of profile HMMs for remote homology detection through structural alignment. BMC Bioinformatics. 8, pp.435 (2007).
Gheorghiu-Svirschevski S, IM Rouzine, Coffin JM. Increasing sequence correlation limits the efficiency of recombination in a multisite evolution model. Mol Biol Evol. 24(2), pp.574-86 (2007).
IM Rouzine, Coffin JM. Highly fit ancestors of a partly sexual haploid population. Theor Popul Biol. 71(2), pp.239-50 (2007).
Baussand J, Carbone A. Metagénomique bactérienne et virale - nouvelles définitions d'espace microbien et nouveaux défis algorithmiques. Technique et Sciences Informatiques, special issue on "Modeling, simulations in postgenomics", Hérmes. (2007).
Breton J, Bart-Delabesse E, Biligui S, Carbone A, Seiller X, Okome-Nkoumou M, Nzamba C, Kombila M, Accoceberry I, Thellier M. New Highly Divergent rRNA Sequence among Biodiverse Genotypes of Enterocytozoon bieneusi Strains Isolated from Humans in Gabon and Cameroon. Journal of Clinical Microbiology. 45, pp.2580-2589 (2007).
Cosentino Lagomarsino M, Sellerio A, Isambert H, Bassetti B A large-scale evolutionary approach to the analysis of transcription networks. in SYSBIOHEALTH Symposium. Milano. Locomia Innovazione Publ. . (2007)

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