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Publications

Coesel S, Mangogna M, Ishikawa T, Heijde M, Rogato A, Finazzi G, Todo T, Bowler C, Falciatore A. Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity. EMBO Rep. 10(6), pp.655-61 (2009).
Cosentino Lagomarsino M, Sellerio AL, Heijning PD, Bassetti B. Universal features in the genome-level evolution of protein domains. Genome Biol. 10(1), pp.R12 (2009).
Sellerio AL, Bassetti B, Isambert H, Cosentino Lagomarsino M. A comparative evolutionary study of transcription networks. The global role of feedback and hierachical structures. Mol Biosyst. 5(2), pp.170-9 (2009).
De Riso V, Raniello R, Maumus F, Rogato A, Bowler C, Falciatore A. Gene silencing in the marine diatom Phaeodactylum tricornutum. Nucleic Acids Res. 37(14), pp.e96 (2009).
Payen C, Fischer G, Marck C, Proux C, Sherman DJames, Coppée J-Y, Johnston M, Dujon B, Neuvéglise C. Unusual composition of a yeast chromosome arm is associated with its delayed replication. Genome Res. 19(10), pp.1710-21 (2009).
Ciandrini L, Maffi C, Motta A, Bassetti B, Cosentino Lagomarsino M. Feedback topology and XOR-dynamics in Boolean networks with varying input structure. Phys Rev E Stat Nonlin Soft Matter Phys. 80(2 Pt 2), pp.026122 (2009).
Schug A, Weigt M, Onuchic JN, Hwa T, Szurmant H. High-resolution protein complexes from integrating genomic information with molecular simulation. Proc Natl Acad Sci U S A. 106(52), pp.22124-9 (2009).
Baussand J, Carbone A*. A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence. PLoS Comput Biol. 5(9), pp.e1000488 (2009).
Fischer G, Thompson D, Wortman JRusso, Fairhead C. Unraveling the genomic diversity of small eukaryotes. Genome Biol. 10(12), pp.318 (2009).
Koszul R, Fischer G. A prominent role for segmental duplications in modeling eukaryotic genomes. C R Biol. 332(2-3), pp.254-66 (2009).
Bailey AG, Lowe CP, Pagonabarraga I, Cosentino Lagomarsino M. Accurate simulation dynamics of microscopic filaments using "caterpillar" Oseen hydrodynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 80(4 Pt 2), pp.046707 (2009).
Cosentino Lagomarsino M, Bassetti B, Castellani G, Remondini D. Functional models for large-scale gene regulation networks: realism and fiction. Mol Biosyst. 5(4), pp.335-44 (2009).
Weigt M, White RA, Szurmant H, Hoch JA, Hwa T. Identification of direct residue contacts in protein-protein interaction by message passing. Proc Natl Acad Sci U S A. 106(1), pp.67-72 (2009).
Hu H, Wrogemann K, Kalscheuer V, Tzschach A, Richard H, Haas SA, Menzel C, Bienek M, Froyen G, Raynaud M, Van Bokhoven H, Chelly J, Ropers H, Chen W. Erratum to: Mutation screening in 86 known X-linked mental retardation genes by droplet-based multiplex PCR and massive parallel sequencing. Hugo J. 3(1-4), pp.83 (2009).
Váchová L, Kučerová H, Devaux F, lehlová MÚ, Palková Z. Metabolic diversification of cells during the development of yeast colonies. Environ Microbiol. 11(2), pp.494-504 (2009).

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