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Publications

Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M.
Direct-coupling analysis of residue coevolution captures native contacts across many protein families.
Proceedings of the National Academy of Sciences. 108, pp.E1293-E1301 (2011).
Lelandais G, Goudot C, Devaux F.
The evolution of gene expression regulatory networks in yeasts.
C R Biol. 334(8-9), pp.655-61 (2011).
Bruot N, Damet L, Kotar J, Cicuta P, Cosentino Lagomarsino M.
Noise and synchronization of a single active colloid.
Phys Rev Lett. 107(9), pp.094101 (2011).
Grant MAA, Saggioro C, Ferrari U, Bassetti B, Sclavi B, Cosentino Lagomarsino M.
DnaA and the timing of chromosome replication in Escherichia coli as a function of growth rate.
BMC Syst Biol. 5, pp.201 (2011).
Bernardes JS, Carbone A, Zaverucha G.
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models.
BMC Bioinformatics. 12, pp.83 (2011).
Scolari VF, Bassetti B, Sclavi B, Cosentino Lagomarsino M.
Gene clusters reflecting macrodomain structure respond to nucleoid perturbations.
Mol Biosyst. 7(3), pp.878-88 (2011).
Olliver A, Saggioro C, Herrick J, Sclavi B.
DnaA-ATP acts as a molecular switch to control levels of ribonucleotide reductase expression in Escherichia coli.
Mol Microbiol. 76(6), pp.1555-71 (2010).
Adrover M, Pauwels K, Prigent S, de Chiara C, Xu Z, Chapuis C, Pastore A, Rezaei H.
Prion fibrillization is mediated by a native structural element that comprises helices H2 and H3.
J Biol Chem. 285(27), pp.21004-12 (2010).
Ye S, Berger AAnn, Petzold D, Reimann O, Matt B, Koksch B.
Chemical aminoacylation of tRNAs with fluorinated amino acids for in vitro protein mutagenesis.
O’Hagan D (Eds.). Beilstein Journal of Organic Chemistry. 6, pp.40 (2010).
IM Rouzine, Coffin JM.
Multi-site adaptation in the presence of infrequent recombination.
Theoretical population biology. 77, pp.189–204 (2010).
Sergeev RA, Batorsky RE, IM Rouzine.
Model with two types of CTL regulation and experiments on CTL dynamics.
J Theor Biol. 263(3), pp.369-84 (2010).
Ye S, Zaitseva E, Caltabiano G, Schertler GFX, Sakmar TP, Deupi X, Vogel R.
Tracking G-protein-coupled receptor activation using genetically encoded infrared probes.
Nature. 464(7293), pp.1386-9 (2010).
Oliveira CLuis Pinto, Juul S, Jørgensen HLaerke, Knudsen B, Tordrup D, Oteri F, Falconi M, Koch J, Desideri A, Pedersen JSkov, Andersen FFaucon, Knudsen BRuth.
Structure of nanoscale truncated octahedral DNA cages: variation of single-stranded linker regions and influence on assembly yields.
ACS Nano. 4(3), pp.1367-76 (2010).
Di Marino D, Oteri F, Rocca BMorozzo De, Chillemi G, Falconi M.
ADP/ATP mitochondrial carrier MD simulations to shed light on the structural-dynamical events that, after an additional mutation, restore the function in a pathological single mutant.
J Struct Biol. 172(3), pp.225-32 (2010).
Pakdaman K, Perthame B, Salort D.
Dynamics of a structured neuron population.
Nonlinearity. 23, pp.55 (2010).

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