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Publications

Scolari VF, Cosentino Lagomarsino M. Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid. Soft Matter. 11, pp.1677-1687 (2015).
Bernardes JS, Vieira F, Costa L, Zaverucha G. Evaluation and improvements of clustering algorithms for detecting remote homologous protein families. BMC Bioinformatics. 16(1), pp.34 (2015).
Friedrich A, Jung P, Reisser C, Fischer G, Schacherer J. Population genomics reveals chromosome-scale heterogeneous evolution in a protoploid yeast. Molecular Biology and Evolution. 32(1), (2015).
Fumagalli MR, Osella M, Thomen P, Heslot F, Cosentino Lagomarsino M. Speed of evolution in large asexual populations with diminishing returns. Journal of Theoretical Biology. 365, pp.23-31 (2015).
Fortunato AE, Annunziata R, Jaubert M, Bouly J-P, Falciatore A. Dealing with light: The widespread and multitasking cryptochrome/photolyase family in photosynthetic organisms. J Plant Physiol. 172, pp.42-54 (2015).
Perez-Perez ME, Zaffagnini M, Marchand CH, Crespo JL, Lemaire SD. The yeast autophagy protease Atg4 is regulated by thioredoxin. Autophagy. 10, pp.1953-64 (2014).
Veyel D, Sommer F, Muranaka LS, Rutgers M, Lemaire SD, Schroda M. In vitro characterization of bacterial and chloroplast Hsp70 systems reveals an evolutionary optimization of the co-chaperones for their Hsp70 partner. Biochem J. 460, pp.13-24 (2014).
Pérez-Martin M, Perez-Perez ME, Lemaire SD, Crespo JL. Oxidative stress contributes to autophagy induction in response to endoplasmic reticulum stress in Chlamydomonas reinhardtii. Plant Physiol. 166, pp.997-1008 (2014).
Zaffagnini M, Michelet L, Sciabolini C, Di Giacinto N, Morisse S, Marchand CH, Trost P, Fermani S, Lemaire SD. High-resolution crystal structure and redox properties of chloroplastic triosephosphate isomerase from Chlamydomonas reinhardtii. Mol Plant. 7, pp.101-20 (2014).
de Paepe R, Lemaire SD, Danon A. Cardiolipin at the heart of stress response across kingdoms. Plant Signal Behav. 9, pp.e29228 (2014).
Morisse S, Michelet L, Bedhomme M, Marchand CH, Calvaresi M, Trost P, Fermani S, Zaffagnini M, Lemaire SD. Thioredoxin-dependent redox regulation of chloroplastic phosphoglycerate kinase from Chlamydomonas reinhardtii. J Biol Chem. 289, pp.30012-24 (2014).
Heyno E, Innocenti G, Lemaire SD, Issakidis-Bourguet E, Krieger-Liszkay A. Putative role of the malate valve enzyme NADP-malate dehydrogenase in H2O2 signalling in Arabidopsis. Philos Trans R Soc Lond B Biol Sci. 369, pp.20130228 (2014).
Morisse S, Zaffagnini M, Gao XH, Lemaire SD, Marchand CH. Insight into protein S-nitrosylation in Chlamydomonas reinhardtii. Antioxid Redox Signal. 21, pp.1271-84 (2014).
IM Rouzine, Razooky BS, Weinberger LS. Stochastic variability in HIV affects viral eradication. Proc Natl Acad Sci U S A. 111(37), pp.13251-2 (2014).
IM Rouzine, Coffin JM, Weinberger LS. Fifteen years later: hard and soft selection sweeps confirm a large population number for HIV in vivo. PLoS Genet. 10(2), pp.e1004179 (2014).

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