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Publications

Merhej J, Frigo A, Le Crom S, Camadro J-M, Devaux F, Lelandais G. bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes. Yeast. 31, pp.375–391 (2014).
Couvé S, Ladroue C, Laine E, Mahtouk K, Guégan J, Gad S, Le Jeune H, Le Gentil M, Nuel G, Kim WY, Lecomte B, Pagès J-C, Collin C, Lasne F, Benusiglio PR, de Paillerets BBressac-, Feunteun J, Lazar V, Gimenez-Roqueplo A-P, Mazure NM, Dessen P, Tchertanov L, Mole DR, Kaelin W, Ratcliffe P, Richard S, Gardie B. Genetic Evidence of a Precisely Tuned Dysregulation in the Hypoxia Signaling Pathway during Oncogenesis. Cancer Res. 74(22), pp.6554-64 (2014).
Schulz MH, Weese D, Holtgrewe M, Dimitrova V, Niu S, Reinert K, Richard H. Fiona: a parallel and automatic strategy for read error correction. Bioinformatics. 30(17), pp.i356-63 (2014).
Osella M, Nugent E, Cosentino Lagomarsino M. Concerted control of Escherichia coli cell division. Proc Natl Acad Sci U S A. 111(9), pp.3431-5 (2014).
Gomes PDa Silva F, Panel N, Laine E, Pascutti PGelado, Solary E, Tchertanov L. Differential Effects of CSF-1R D802V and KIT D816V Homologous Mutations on Receptor Tertiary Structure and Allosteric Communication. PLOS ONE. 9(5), (2014).
Carbone A Extracting Coevolving Characters from a Tree of Species. in Discrete and Topological Models in Molecular Biology. Springer Berlin Heidelberg. pp. 45-65 (2014)
Mathelier A, Carbone A. Predicted human structural clusters of miRNAs target cancer genes. Atlas Genet Cytogenet Oncol Haematol. (2014).
Rogato A, Richard H, Sarazin A, Voss B, Cheminant Navarro S, Champeimont R, Navarro L, Carbone A, Hess WR, Falciatore A. The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum. BMC Genomics. 15, pp.698 (2014).
Thacker VV, Bromek K, Meijer B, Kotar J, Sclavi B, Cosentino Lagomarsino M, Keyser UF, Cicuta P. Bacterial nucleoid structure probed by active drag and resistive pulse sensing. Integr Biol (Camb). 6(2), pp.184-91 (2014).
Daboussi F, Leduc S, Maréchal A, Dubois G, Guyot V, Perez-Michaut C, Amato A, Falciatore A, Juillerat A, Beurdeley M, Voytas DF, Cavarec L, Duchateau P. Genome engineering empowers the diatom Phaeodactylum tricornutum for biotechnology. Nat Commun. 5, pp.3831 (2014).
Louvel H, Gillet-Markowska A, Liti G, Fischer G. A set of genetically diverged Saccharomyces cerevisiae strains with markerless deletions of multiple auxotrophic genes. Yeast. 31(3), pp.91-101 (2014).
Grilli J, Romano M, Bassetti F, Cosentino Lagomarsino M. Cross-species gene-family fluctuations reveal the dynamics of horizontal transfers. Nucleic Acids Res. 42(11), pp.6850-60 (2014).
Raible F, Falciatore A. It's about time: rhythms as a new dimension of molecular marine research. Mar Genomics. 14, pp.1-2 (2014).
Mota S, Vieira N, Barbosa S, Delaveau T, Torchet C, Le Saux A, Garcia M, Pereira A, Lemoine S, Coulpier F, Darzacq X, Benard L, Casal M, Devaux F, Paiva S. Role of the DHH1 gene in the regulation of monocarboxylic acids transporters expression in Saccharomyces cerevisiae. PLoS One. 9(11), pp.e111589 (2014).
Mirauta B, Nicolas P, Richard H. Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models. Bioinformatics. 30(10), pp.1409-16 (2014).

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