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Publications

Di Marino D, Oteri F, Rocca BMorozzo De, Chillemi G, Falconi M.
ADP/ATP mitochondrial carrier MD simulations to shed light on the structural-dynamical events that, after an additional mutation, restore the function in a pathological single mutant.
J Struct Biol. 172(3), pp.225-32 (2010).
Oliveira CLuis Pinto, Juul S, Jørgensen HLaerke, Knudsen B, Tordrup D, Oteri F, Falconi M, Koch J, Desideri A, Pedersen JSkov, Andersen FFaucon, Knudsen BRuth.
Structure of nanoscale truncated octahedral DNA cages: variation of single-stranded linker regions and influence on assembly yields.
ACS Nano. 4(3), pp.1367-76 (2010).
Bernicot F, Maury B, Salort D.
A 2-adic approach of the human respiratory tree.
ArXiv e-prints. (2010).
Pakdaman K, Perthame B, Salort D.
Dynamics of a structured neuron population.
Nonlinearity. 23, pp.55 (2010).
Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LDW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TAF, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Lin Y-C, George J, Sweedler J, Southey B, Gunaratne P, Watson M, Nam K, Backstrom N, Smeds L, Nabholz B, Itoh Y, Whitney O, Pfenning AR, Howard J, Volker M, Skinner BM, Griffin DK, Ye L, McLaren WM, Flicek P, Quesada V, Velasco G, Lopez-Otin C, Puente XS, Olender T, Lancet D, Smit AFA, Hubley R, Konkel MK, Walker JA, Batzer MA, Gu W, Pollock DD, Chen L, Cheng Z, Eichler EE, Stapley J, Slate J, Ekblom R, Birkhead T, Burke T, Burt D, Scharff C, Adam I, Richard H, Sultan M, Soldatov A, Lehrach H, Edwards SV, Yang S-P, Li XC, Graves T, Fulton L, Nelson J, Chinwalla A, Hou S, et al..
The genome of a songbird.
Nature. 464(7289), pp.757 - 762 (2010).
Bradde S, Weigt M, Braunstein A, Zecchina R, Tria F, Mahmoudi H.
Aligning graphs and finding substructures by message passing.
Europhys. Lett. . 89(37009), (2010).
Heijde M, Zabulon G, Corellou F, Ishikawa T, Brazard J, Usman A, Sanchez F, Plaza P, Martin M, Falciatore A, Todo T, Bouget F-Y, Bowler C.
Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes.
Plant Cell Environ. 33(10), pp.1614-26 (2010).
Mathelier A, Carbone A.
MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data.
Bioinformatics. 26(18), pp.2226-34 (2010).
Laine E, Goncalves C, Karst JC, Lesnard A, Rault S, Tang W-J, Malliavin TE, Ladant D, Blondel A.
Use of allostery to identify inhibitors of calmodulin-induced activation of Bacillus anthracis edema factor.
Proc Natl Acad Sci U S A. 107(25), pp.11277-82 (2010).
Angelini A, Amato A, Bianconi G, Bassetti B, Cosentino Lagomarsino M.
Mean-field methods in evolutionary duplication-innovation-loss models for the genome-level repertoire of protein domains.
Phys Rev E Stat Nonlin Soft Matter Phys. 81(2 Pt 1), pp.021919 (2010).
Bowler C, De Martino A, Falciatore A.
Diatom cell division in an environmental context.
Curr Opin Plant Biol. 13(6), pp.623-30 (2010).
Mathelier A, Carbone A.
Chromosomal periodicity and positional networks of genes in Escherichia coli.
Mol Syst Biol. 6, pp.366 (2010).
Fusco D, Grassi L, Bassetti B, Caselle M, Cosentino Lagomarsino M.
Ordered structure of the transcription network inherited from the yeast whole-genome duplication.
BMC Syst Biol. 4, pp.77 (2010).
Bailleul B, Rogato A, De Martino A, Coesel S, Cardol P, Bowler C, Falciatore A, Finazzi G.
An atypical member of the light-harvesting complex stress-related protein family modulates diatom responses to light.
Proc Natl Acad Sci U S A. 107(42), pp.18214-9 (2010).
Richard H, Schulz MH, Sultan M, Nürnberger A, Schrinner S, Balzereit D, Dagand E, Rasche A, Lehrach H, Vingron M, Haas SA, Yaspo M-L.
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments.
Nucleic Acids Res. 38(10), pp.e112 (2010).

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