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Publications

Damet L, Cicuta GM, Kotar J, Cosentino Lagomarsino M, Cicuta P. Hydrodynamically synchronized states in active colloidal arrays. Soft Matter. 8, pp.8672–8678 (2012).
Bruot N, Kotar J, de Lillo F, Cosentino Lagomarsino M, Cicuta P. Driving potential and noise level determine the synchronization state of hydrodynamically coupled oscillators. Phys Rev Lett. 109(16), pp.164103 (2012).
Uhlendorf J, Miermont A, Delaveau T, Charvin G, Fages F, Bottani S, Batt G, Hersen P. Long-term model predictive control of gene expression at the population and single-cell levels. Proc Natl Acad Sci U S A. 109(35), pp.14271-6 (2012).
Grassi L, Caselle M, Lercher MJ, Cosentino Lagomarsino M. Horizontal gene transfers as metagenomic gene duplications. Mol Biosyst. 8(3), pp.790-5 (2012).
Dago AE, Schug A, Procaccini A, Hoch JA, Weigt M, Szurmant H. Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis. Proc Natl Acad Sci U S A. 109(26), pp.E1733-42 (2012).
Dhamgaye S, Devaux F, Manoharlal R, Vandeputte P, Shah AHaseeb, Singh A, Blugeon C, Sanglard D, Prasad R. In vitro effect of malachite green on Candida albicans involves multiple pathways and transcriptional regulators UPC2 and STP2. Antimicrob Agents Chemother. 56(1), pp.495-506 (2012).
Laine E, Auclair C, Tchertanov L. Allosteric communication across the native and mutated KIT receptor tyrosine kinase. PLoS Comput Biol. 8(8), pp.e1002661 (2012).
Benza VG, Bassetti B, Dorfman KD, Scolari VF, Bromek K, Cicuta P, Cosentino Lagomarsino M. Physical descriptions of the bacterial nucleoid at large scales, and their biological implications. Rep Prog Phys. 75(7), pp.076602 (2012).
Sułkowska JI, Morcos F, Weigt M, Hwa T, Onuchic JN. Genomics-aided structure prediction. Proc Natl Acad Sci U S A. 109(26), pp.10340-5 (2012).
Dib L, Carbone A*. CLAG: an unsupervised non hierarchical clustering algorithm handling biological data. BMC Bioinformatics. 13, pp.194 (2012).
Agier N, Fischer G. The mutational profile of the yeast genome is shaped by replication. Mol Biol Evol. 29(3), pp.905-13 (2012).
Cicuta GM, Onofri E, Cosentino Lagomarsino M, Cicuta P. Patterns of synchronization in the hydrodynamic coupling of active colloids. Phys Rev E Stat Nonlin Soft Matter Phys. 85(1 Pt 2), pp.016203 (2012).
Grassi L, Grilli J, Cosentino Lagomarsino M. Large-scale dynamics of horizontal transfers. Mob Genet Elements. 2(3), pp.163-167 (2012).
Scolari VF, Zarei M, Osella M, Cosentino Lagomarsino M. NuST: analysis of the interplay between nucleoid organization and gene expression. Bioinformatics. 28(12), pp.1643-4 (2012).
Bottinelli A, Bassetti B, Cosentino Lagomarsino M, Gherardi M. Influence of homology and node age on the growth of protein-protein interaction networks. Phys Rev E Stat Nonlin Soft Matter Phys. 86(4 Pt 1), pp.041919 (2012).

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