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Publications

Cosentino Lagomarsino M, Jona P, Bassetti B.
Logic backbone of a transcription network.
Phys Rev Lett. 95(15), pp.158701 (2005).
Carbone A, Madden R.
Insights on the evolution of metabolic networks of unicellular translationally biased organisms from transcriptomic data and sequence analysis.
J Mol Evol. 61(4), pp.456-69 (2005).
Cosentino Lagomarsino M, Pagonabarraga I, Lowe CP.
Hydrodynamic induced deformation and orientation of a microscopic elastic filament.
Phys Rev Lett. 94(14), pp.148104 (2005).
Orsini G, Igonet S, Pène C, Sclavi B, Buckle M, Uzan M, Kolb A.
Phage T4 early promoters are resistant to inhibition by the anti-sigma factor AsiA.
Mol Microbiol. 52(4), pp.1013-28 (2004).
Malygin EG, Sclavi B, Zinoviev VV, Evdokimov AA, Hattman S, Buckle M.
Bacteriophage T4Dam DNA-(adenine-N(6))-methyltransferase. Comparison of pre-steady state and single turnover methylation of 40-mer duplexes containing two (un)modified target sites.
J Biol Chem. 279(48), pp.50012-8 (2004).
Ye S, Strzalka J, Churbanova IY, Zheng S, Johansson JS, J Blasie K.
A model membrane protein for binding volatile anesthetics.
Biophys J. 87(6), pp.4065-74 (2004).
Ye S, Strzalka JW, Discher BM, Noy D, Zheng S, P Dutton L, J Blasie K.
Amphiphilic 4-helix bundles designed for biomolecular materials applications.
Langmuir. 20(14), pp.5897-904 (2004).
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuvéglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich J-M, Beyne E, Bleykasten C, Boisrame A, Boyer J, Cattolico L, Confanioleri F, de Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, Groppi A, Hantraye F, Hennequin C, Jauniaux N, Joyet P, Kachouri R, Kerrest A, Koszul R, Lemaire M, Lesur I, Ma L, Muller H, Nicaud J-M, Nikolski M, Oztas S, Ozier-Kalogeropoulos O, Pellenz S, Potier S, Richard G-F, Straub M-L, Suleau A, Swennen D, Tekaia F, Wesolowski-Louvel MICHELINE, Westhof E, Wirth B, Zeniou-Meyer M, Zivanovic I, Bolotin-Fukuhara M, Thierry A, Bouchier C, Caudron B, Scarpelli C, Gaillardin C, Weissenbach J, Wincker P, Souciet J-L.
Genome evolution in yeasts.
Nature. 430(6995), pp.35 - 44 (2004).
Carbone A, Mao C, Constantinou PE, Ding B, Kopatsch J, Sherman WB, Seeman NC.
3D fractal DNA assembly from coding, geometry and protection.
Natural Computing. 3, pp.235–252 (2004).
Carbone A, Seeman NC
Molecular tiling and DNA self-assembly.
in Aspects of Molecular Computing. Springer. pp. 61–83 (2004)
Lelandais G, Le Crom S, Devaux F, Vialette S, Church GM, Jacq C, Marc P.
yMGV: a cross-species expression data mining tool.
Nucleic Acids Res. 32(Database issue), pp.D323-5 (2004).
Lafontaine I, Fischer G, Talla E, Dujon B.
Gene relics in the genome of the yeast Saccharomyces cerevisiae.
Gene. 335, pp.1-17 (2004).
Paiva S, Devaux F, Barbosa S, Jacq C, Casal M.
Ady2p is essential for the acetate permease activity in the yeast Saccharomyces cerevisiae.
Yeast. 21(3), pp.201-10 (2004).
Váchová L, Devaux F, Kučerová H, Ricicová M, Jacq C, Palková Z.
Sok2p transcription factor is involved in adaptive program relevant for long term survival of Saccharomyces cerevisiae colonies.
J Biol Chem. 279(36), pp.37973-81 (2004).
Boyer J, Badis G, Fairhead C, Talla E, Hantraye F, Fabre E, Fischer G, Hennequin C, Koszul R, Lafontaine I, Ozier-Kalogeropoulos O, Ricchetti M, Richard G-F, Thierry A, Dujon B.
Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae.
Genome Biol. 5(9), pp.R72 (2004).

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