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Publications

Cocco S, Monasson R, Weigt M. From principal component to direct coupling analysis of coevolution in proteins: low-eigenvalue modes are needed for structure prediction. PLoS Comput Biol. 9(8), pp.e1003176 (2013).
Agier N, Romano OMaria, Touzain F, Cosentino Lagomarsino M, Fischer G. The spatiotemporal program of replication in the genome of Lachancea kluyveri. Genome Biol Evol. 5(2), pp.370-88 (2013).
Mathelier A, Carbone A*. Large scale chromosomal mapping of human microRNA structural clusters. Nucleic Acids Res. 41(8), pp.4392-408 (2013).
Javer A, Long Z, Nugent E, Grisi M, Siriwatwetchakul K, Dorfman KD, Cicuta P, Cosentino Lagomarsino M. Short-time movement of E. coli chromosomal loci depends on coordinate and subcellular localization. Nat Commun. 4, pp.3003 (2013).
Molinelli EJ, Korkut A, Wang W, Miller ML, Gauthier NP, Jing X, Kaushik P, He Q, Mills G, Solit DB, Pratilas CA, Weigt M, Braunstein A, Pagnani A, Zecchina R, Sander C. Perturbation biology: inferring signaling networks in cellular systems. PLoS Comput Biol. 9(12), pp.e1003290 (2013).
Bedhomme M, Adamo M, Marchand CH, Couturier J, Rouhier N, Lemaire SD, Zaffagnini M, Trost P Glutathionylation of cytosolic glyceraldehyde-3-phosphate dehydrogenase from the model plant Arabidopsis thaliana is reversed by both glutaredoxins and thioredoxins in vitro. (2012)
Zaffagnini M, Bedhomme M, Lemaire SD, Trost P. The emerging roles of protein glutathionylation in chloroplasts. Plant Sci. 185-186, pp.86-96 (2012).
Zaffagnini M, Bedhomme M, Marchand CH, Couturier JR, Gao XH, Rouhier N, Trost P, Lemaire SD. Glutaredoxin s12: unique properties for redox signaling. Antioxid Redox Signal. 16, pp.17-32 (2012).
Zaffagnini M, Bedhomme M, Marchand CH, Morisse S, Trost P, Lemaire SD. Redox regulation in photosynthetic organisms: focus on glutathionylation. Antioxid Redox Signal. 16, pp.567-86 (2012).
Perez-Perez ME, Lemaire SD, Crespo JL. Reactive oxygen species and autophagy in plants and algae. Plant Physiol. 160, pp.156-64 (2012).
Zaffagnini M, Bedhomme M, Groni H, Marchand CH, Puppo C, Gontero B, Cassier-Chauvat C, Decottignies P, Lemaire SD. Glutathionylation in the photosynthetic model organism Chlamydomonas reinhardtii: a proteomic survey. Mol Cell Proteomics. 11, pp.M111 014142 (2012).
Xu Z, Prigent S. Guide du mémoire et de la thèse en sciences. (2012).
Good BH, IM Rouzine, Balick DJ, Hallatschek O, Desai MM. Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations. Proc Natl Acad Sci U S A. 109(13), pp.4950-5 (2012).
Dib L, Carbone A*. Protein Fragments: Functional and Structural Roles of Their Coevolution Networks. PLoS ONE. 7(11), pp.e48124 (2012).
Dhamgaye S, Bernard M, Lelandais G, Sismeiro O, Lemoine S, Coppée J-Y, Le Crom S, Prasad R, Devaux F. RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans. BMC Genomics. 13, pp.396 (2012).

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