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Publications

Boto R, Peccati F, Laplaza R, Quan C, Carbone A, Piquemal J-P, Maday Y, Contreras-García J. NCIPLOT4: fast, robust and quantitative analysis of noncovalent interactions. Journal of Chemical Theory and Computation. pp.4150–4158 (2020).
Grudinin S, Laine E, Hoffmann A. Predicting Protein Functional Motions: an Old Recipe with a New Twist. Biophysical Journal. (2020).
Ait-hamlat A, Zea DJavier, Labeeuw A, Polit L, Richard H, Laine E. Transcripts’ Evolutionary History and Structural Dynamics Give Mechanistic Insights into the Functional Diversity of the JNK Family. Journal of Molecular Biology. (2020).
Teppa E, Zea D, Oteri F, Carbone A. COVTree: Coevolution in OVerlapped sequences by Tree analysis server. Nucleic Acids Research. (2020).
Drillon G, Champeimont R, Oteri F, Fischer G, Carbone A. Phylogenetic reconstruction based on synteny block and gene adjacencies. Molecular Biology and Evolution. 37(9), pp.2747–2762 (2020).
David L, Vicedomini R, Richard H, Carbone A. Targeted domain assembly for fast functional profiling of metagenomic datasets with S3A. Bioinformatics. (2020).
de Carpentier F, Le Peillet J, Boisset ND, Crozet P, Lemaire SD, Danon A. Blasticidin S Deaminase: A New Efficient Selectable Marker for Chlamydomonas reinhardtii. Frontiers in Plant Science. 11, (2020).
O'Donnell S, Fischer G. MUM&Co: Accurate detection of all SV types through whole genome alignment. Bioinformatics (Oxford, England). 36(10), pp.3242-3243 (2020).
Yousuf M, Iuliani I, Veetil RT, Seshasayee A S N, Sclavi B, Cosentino Lagomarsino M. Early fate of exogenous promoters in E. coli. Nucleic Acids Research. (2020).
Teppa E, Nadalin F, Combet C, Zea D, David L, Carbone A. Coevolution analysis of amino-acids reveals diversified drug resistance solutions in viral sequences: a case study of hepatitis B virus. Virus Evolution. 6(1), (2020).
Corsi F, Lavery R, Laine E, Carbone A. Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties. PLoS Computational Biology. 16(2), (2020).
Laplaza R, Peccati F, Boto R, Quan C, Carbone A, Piquemal J-P, Maday Y, Contreras-García J. NCIPLOT and the analysis of noncovalent interactions using the reduced density gradient. WIREs Computational Molecular Science. (2020).
Gueudré T, Baldassi C, Pagnani A, Weigt M Predicting Interacting Protein Pairs by Coevolutionary Paralog Matching. in Protein-Protein Interaction Networks. Methods in Molecular Biology,. Edited by: Canzar S., Ringeling F. 2074, New York, NY. Humana. (2020)
Sarti E, Aleksandrova AA, Ganta SK, Yavatkar AS, Forrest LR. EncoMPASS: an online database for analyzing structure and symmetry in membrane proteins. Nucleic Acids Res. 47(D1), pp.D315 - D321 (2019).
Moussa A, Perthame B, Salort D. Backward Parabolicity, Cross-Diffusion and Turing Instability. 29(1), pp.139 - 162 (2019).

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