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Publications

Jourdren L, Delaveau T, Marquenet E, Jacq C, Garcia M. CORSEN, a new software dedicated to microscope-based 3D distance measurements: mRNA-mitochondria distance, from single-cell to population analyses. RNA. 16(7), pp.1301-7 (2010).
Fusco D, Grassi L, Bassetti B, Caselle M, Cosentino Lagomarsino M. Ordered structure of the transcription network inherited from the yeast whole-genome duplication. BMC Syst Biol. 4, pp.77 (2010).
Bailleul B, Rogato A, De Martino A, Coesel S, Cardol P, Bowler C, Falciatore A, Finazzi G. An atypical member of the light-harvesting complex stress-related protein family modulates diatom responses to light. Proc Natl Acad Sci U S A. 107(42), pp.18214-9 (2010).
Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R. Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. BMC Bioinformatics. 11, pp.355 (2010).
Richard H, Schulz MH, Sultan M, Nürnberger A, Schrinner S, Balzereit D, Dagand E, Rasche A, Lehrach H, Vingron M, Haas SA, Yaspo M-L. Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments. Nucleic Acids Res. 38(10), pp.e112 (2010).
Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A*. Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling. PLoS Comput Biol. 5(1), pp.e1000267 (2009).
Ye S, Huber T, Vogel R, Sakmar TP. FTIR analysis of GPCR activation using azido probes. Nat Chem Biol. 5(6), pp.397 - 399 (2009).
Maury B, Salort D, Vannier C. Trace theorems for trees and application to the human lungs. NHM. pp.469-500 (2009).
Salort D. TRANSPORT EQUATIONS WITH UNBOUNDED FORCE FIELDS AND APPLICATION TO THE VLASOV–POISSON EQUATION. Mathematical Models and Methods in Applied Sciences. 19, pp.199-228 (2009).
Horard B, Eymery A, Fourel G, Vassetzky N, Puechberty J, Roizes G, Lebrigand K, Barbry P, Laugraud A, Gautier C, Ben Simon E, Devaux F, Magdinier F, Vourc'h C, Gilson E. Global analysis of DNA methylation and transcription of human repetitive sequences. Epigenetics. 4(5), pp.339-50 (2009).
Carbone A*, Dib L Co-evolution and Information Signals in Biological Sequences. in Theory and Applications of Models of Computation. LNCS 5532, Springer Berlin Heidelberg. pp. 6-17 (2009)
Abbott JJ, Cosentino Lagomarsino M, Zhang L, Dong L, Nelson BJ. How should microrobots swim?. The International Journal of Robotics Research. (2009).
Carbone A*, Engelen S Information content of sets of biological sequences revisited. in Algorithmic Bioprocesses. Springer. pp. 31–42 (2009)
Koszul R, Fischer G. A prominent role for segmental duplications in modeling eukaryotic genomes. C R Biol. 332(2-3), pp.254-66 (2009).
Payen C, Fischer G, Marck C, Proux C, Sherman DJames, Coppée J-Y, Johnston M, Dujon B, Neuvéglise C. Unusual composition of a yeast chromosome arm is associated with its delayed replication. Genome Res. 19(10), pp.1710-21 (2009).

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