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Publications

Cosentino Lagomarsino M, Sellerio AL, Heijning PD, Bassetti B.
Universal features in the genome-level evolution of protein domains.
Genome Biol. 10(1), pp.R12 (2009).
Váchová L, Kučerová H, Devaux F, lehlová MÚ, Palková Z.
Metabolic diversification of cells during the development of yeast colonies.
Environ Microbiol. 11(2), pp.494-504 (2009).
Weigt M, White RA, Szurmant H, Hoch JA, Hwa T.
Identification of direct residue contacts in protein-protein interaction by message passing.
Proc Natl Acad Sci U S A. 106(1), pp.67-72 (2009).
Bailey AG, Lowe CP, Pagonabarraga I, Cosentino Lagomarsino M.
Accurate simulation dynamics of microscopic filaments using "caterpillar" Oseen hydrodynamics.
Phys Rev E Stat Nonlin Soft Matter Phys. 80(4 Pt 2), pp.046707 (2009).
Sellerio AL, Bassetti B, Isambert H, Cosentino Lagomarsino M.
A comparative evolutionary study of transcription networks. The global role of feedback and hierachical structures.
Mol Biosyst. 5(2), pp.170-9 (2009).
Fischer G, Thompson D, Wortman JRusso, Fairhead C.
Unraveling the genomic diversity of small eukaryotes.
Genome Biol. 10(12), pp.318 (2009).
Bassetti B, Zarei M, Cosentino Lagomarsino M, Bianconi G.
Statistical mechanics of the "Chinese restaurant process": lack of self-averaging, anomalous finite-size effects, and condensation.
Phys Rev E Stat Nonlin Soft Matter Phys. 80(6 Pt 2), pp.066118 (2009).
Coesel S, Mangogna M, Ishikawa T, Heijde M, Rogato A, Finazzi G, Todo T, Bowler C, Falciatore A.
Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity.
EMBO Rep. 10(6), pp.655-61 (2009).
Koszul R, Fischer G.
A prominent role for segmental duplications in modeling eukaryotic genomes.
C R Biol. 332(2-3), pp.254-66 (2009).
Ciandrini L, Maffi C, Motta A, Bassetti B, Cosentino Lagomarsino M.
Feedback topology and XOR-dynamics in Boolean networks with varying input structure.
Phys Rev E Stat Nonlin Soft Matter Phys. 80(2 Pt 2), pp.026122 (2009).
Hu H, Wrogemann K, Kalscheuer V, Tzschach A, Richard H, Haas SA, Menzel C, Bienek M, Froyen G, Raynaud M, Van Bokhoven H, Chelly J, Ropers H, Chen W.
Erratum to: Mutation screening in 86 known X-linked mental retardation genes by droplet-based multiplex PCR and massive parallel sequencing.
Hugo J. 3(1-4), pp.83 (2009).
Sclavi B.
Time-resolved footprinting for the study of the structural dynamics of DNA-protein interactions.
Biochem Soc Trans. 36(Pt 4), pp.745-8 (2008).
Menezes RA, Amaral C, Batista-Nascimento L, Santos C, Ferreira RBoavida, Devaux F, Eleutherio ECA, Rodrigues-Pousada C.
Contribution of Yap1 towards Saccharomyces cerevisiae adaptation to arsenic-mediated oxidative stress.
Biochem J. 414(2), pp.301-11 (2008).
Dutta RN, IM Rouzine, Smith SD, Wilke CO, Novella IS.
Rapid adaptive amplification of preexisting variation in an RNA virus.
J Virol. 82(9), pp.4354-62 (2008).
IM Rouzine, Brunet E, Wilke CO.
The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation.
Theor Popul Biol. 73(1), pp.24-46 (2008).

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