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Publications

Bassetti F, Cosentino Lagomarsino M, Bassetti B, Jona P.
Random networks tossing biased coins.
Phys Rev E Stat Nonlin Soft Matter Phys. 75(5 Pt 2), pp.056109 (2007).
Siaut M, Heijde M, Mangogna M, Montsant A, Coesel S, Allen A, Manfredonia A, Falciatore A, Bowler C.
Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum.
Gene. 406(1-2), pp.23-35 (2007).
Fusco D, Bassetti B, Jona P, Cosentino Lagomarsino M.
DIA-MCIS: an importance sampling network randomizer for network motif discovery and other topological observables in transcription networks.
Bioinformatics. 23(24), pp.3388-90 (2007).
Leone M, Weigt M.
Clustering by soft-constraint affinity propagation: applications to gene-expression data.
Bioinformatics. 23(20), pp.2708-15 (2007).
Fardeau V, Lelandais G, Oldfield A, Salin H, Lemoine S, Garcia M, Tanty V, Le Crom S, Jacq C, Devaux F.
The central role of PDR1 in the foundation of yeast drug resistance.
J Biol Chem. 282(7), pp.5063-74 (2007).
Cosentino Lagomarsino M, Jona P, Bassetti B, Isambert H.
Hierarchy and feedback in the evolution of the Escherichia coli transcription network.
Proc Natl Acad Sci U S A. 104(13), pp.5516-20 (2007).
IM Rouzine, Sergeev RA, Glushtsov AI.
Two types of cytotoxic lymphocyte regulation explain kinetics of immune response to human immunodeficiency virus.
Proc Natl Acad Sci U S A. 103(3), pp.666-71 (2006).
Sacquin-Mora S, Lavery R, Trojan LA, Carbone A
Une opération de docking croisé à grande échelle pour la détection de partenaires protéiques potentiels.
in Proceedings of the workshop "Mathématiques et Interactions". Paris France. Institut Henri Poincaré. (2006)
Cosentino Lagomarsino M, Jona P, Bassetti B
Randomization and feedback properties of directed graphs inspired by gene networks.
in Computational Methods in Systems Biology. Springer. pp. 227–241 (2006)
Carbone A.
Computational prediction of genomic functional cores specific to different microbes.
J Mol Evol. 63(6), pp.733-46 (2006).
Houalla R, Devaux F, Fatica A, Kufel J, Barrass D, Torchet C, Tollervey D.
Microarray detection of novel nuclear RNA substrates for the exosome.
Yeast. 23(6), pp.439-54 (2006).
Fischer G, Rocha EPC, Brunet F, Vergassola M, Dujon B.
Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages.
PLoS Genet. 2(3), pp.e32 (2006).
Koszul R, Dujon B, Fischer G.
Stability of large segmental duplications in the yeast genome.
Genetics. 172(4), pp.2211-22 (2006).
Sclavi B, Zaychikov E, Rogozina A, Walther F, Buckle M, Heumann H.
Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter.
Proc Natl Acad Sci U S A. 102(13), pp.4706-11 (2005).
IM Rouzine, Coffin JM.
Evolution of HIV Under Selection and Weak Recombination.
Genetics. (2005).

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