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Publications

Sclavi B, Zaychikov E, Rogozina A, Walther F, Buckle M, Heumann H.
Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter.
Proc Natl Acad Sci U S A. 102(13), pp.4706-11 (2005).
IM Rouzine, Coffin JM.
Evolution of HIV Under Selection and Weak Recombination.
Genetics. (2005).
IM Rouzine, Coffin JM.
Evolution of Human Immunodeficiency Virus Under Selection and Weak Recombination.
Genetics. 170(1), pp.7 - 18 (2005).
Discher BM, Noy D, Strzalka J, Ye S, Moser CC, Lear JD, J Blasie K, P Dutton L.
Design of amphiphilic protein maquettes: controlling assembly, membrane insertion, and cofactor interactions.
Biochemistry. 44(37), pp.12329-43 (2005).
Ye S, Discher BM, Strzalka J, Xu T, Wu SP, Noy D, Kuzmenko I, Gog T, Therien MJ, P Dutton L, J Blasie K.
Amphiphilic four-helix bundle peptides designed for light-induced electron transfer across a soft interface.
Nano Lett. 5(9), pp.1658-67 (2005).
Carbone A, Pierce N (Eds.)
DNA Computing.
Proceedings of the 11th International Workshop on DNA Computing - DNA11. London (ON, Canada). LNCS 3892, Springer. (2005).
Carbone A.
Pathways of deduction.
Geometries of nature, living systems, human cognition - New Interactions of Mathematics with Natural Sciences and Humanities. (2005).
Miele V, Bourguignon P-Y, Robelin D, Nuel G, Richard H.
seq++: analyzing biological sequences with a range of Markov-related models.
Bioinformatics. 21, pp.2783-2784 (2005).
Torchet C, Badis G, Devaux F, Costanzo G, Werner M, Jacquier A.
The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae.
RNA. 11(6), pp.928-38 (2005).
Cosentino Lagomarsino M, Jona P, Bassetti B.
The large-scale logico-chemical structure of a transcriptional regulation network.
eprint arXiv:q-bio/0502017. (2005).
Carbone A.
SPAZIO DEI GENI, SPAZIO DEI GENOMI E DETERMINAZIONE DI UN GENOMA MINIMALE.
Annals of the Centro di Ricerca Matematica Ennio de Giorgi, Scuola Normale di Pisa. (2005).
Carbone A.
Revisiting the codon adaptation index from a whole-genome perspective: gene expression, codon bias, and metabolic networks in the context of genomes comparison.
Handelingen van de Koninklijke Vlaamse Academie van Belgie voor Wetenschappen en Kunsten. (2005).
Carbone A, Képès F, Zinovyev A.
Codon bias signatures, organization of microorganisms in codon space, and lifestyle.
Mol Biol Evol. 22(3), pp.547-61 (2005).
Cosentino Lagomarsino M, Jona P, Bassetti B.
Logic backbone of a transcription network.
Phys Rev Lett. 95(15), pp.158701 (2005).
Carbone A, Madden R.
Insights on the evolution of metabolic networks of unicellular translationally biased organisms from transcriptomic data and sequence analysis.
J Mol Evol. 61(4), pp.456-69 (2005).

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