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Publications

Scala S, Carels N, Falciatore A, Chiusano MLuisa, Bowler C. Genome properties of the diatom Phaeodactylum tricornutum. Plant Physiol. 129(3), pp.993-1002 (2002).
Marc P, Devaux F, Jacq C. yMGV: a database for visualization and data mining of published genome-wide yeast expression data. Nucleic Acids Res. 29(13), pp.E63-3 (2001).
IM Rouzine, Rodrigo A, Coffin JM. Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology. Microbiol Mol Biol Rev. 65(1), pp.151-85 (2001).
Gromov M, Carbone A. Mathematical slices of molecular biology. La Gazette des Mathématiciens, Société Mathématique de France, special edition. pp.11-80 (2001).
Fischer G, Neuveglise C, Durrens P, Gaillardin C, Dujon B. Evolution of gene order in the genomes of two related yeast species. Genome Res. 11(12), pp.2009-19 (2001).
Devaux F, Marc P, Bouchoux C, Delaveau T, Hikkel I, Potier MC, Jacq C. An artificial transcription activator mimics the genome-wide properties of the yeast Pdr1 transcription factor. EMBO Rep. 2(6), pp.493-8 (2001).
Devaux F, Marc P, Jacq C. Transcriptomes, transcription activators and microarrays. FEBS Lett. 498(2-3), pp.140-4 (2001).
Carbone A, Gromov M, Prusinkiewicz P. Pattern formation in biology, vision and dynamics. World Scientific Publishing Company. , (2000).
Bassetti B, Cosentino Lagomarsino M, Jona P. A model for the self-organization of microtubules driven by molecular motors. The European Physical Journal B-Condensed Matter and Complex Systems. 15, pp.483–492 (2000).
Fischer G, James SA, Roberts IN, Oliver SG, Louis EJ. Chromosomal evolution in Saccharomyces. Nature. 405(6785), pp.451-4 (2000).
Falciatore A, Riberà d'Alcalà M, Croot P, Bowler C. Perception of environmental signals by a marine diatom. Science. 288(5475), pp.2363-6 (2000).
IM Rouzine, Coffin JM Interplay Between Experiment and Theory in Development of a Working Model for {HIV}-1 Population Dynamics. in Origin and Evolution of Viruses. Elsevier. pp. 225–262 (1999)
IM Rouzine, Coffin JM. Linkage disequilibrium test implies a large effective population number for HIV in vivo. Proc Natl Acad Sci U S A. 96(19), pp.10758-63 (1999).
IM Rouzine, Coffin JM. Search for the mechanism of genetic variation in the pro gene of human immunodeficiency virus. J Virol. 73(10), pp.8167-78 (1999).
Leblanc C, Falciatore A, Watanabe M, Bowler C. Semi-quantitative RT-PCR analysis of photoregulated gene expression in marine diatoms. Plant Mol Biol. 40(6), pp.1031-44 (1999).

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